Protein : Qrob_P0270360.2 Q. robur
Protein Identifier  ? Qrob_P0270360.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=4) K05575 - NADH dehydrogenase I subunit 4 [EC:1.6.5.3] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 532  
Kegg Orthology  K05575
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0008137 NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.
GO:0042773 ATP synthesis coupled electron transport The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:18668091 34 530 + 497 none 99.40 500 89.74 0.0 ndhD CP95_p015 NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|pper:PrpeC_p072 34 530 + 497 none 99.40 500 89.74 0.0 ndhD NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|fve:10251583 34 530 + 497 none 99.40 500 89.34 0.0 ndhD FvH4_C0105 NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|sly:3950410 33 530 + 498 none 99.60 500 85.54 0.0 ndhD LyesC2p017 NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|rcu:RCOM_ORF00106 27 530 + 504 none 99.60 506 84.72 0.0 ndhD NADH dehydrogenase subunit 4
blastp_kegg lcl|sot:4099905 34 530 + 497 none 99.40 500 85.51 0.0 ndhD ndh4 SotuCp075 NADH dehydrogenase subunit 4
blastp_kegg lcl|cit:4271114 34 531 + 498 none 99.80 499 84.94 0.0 ndhD CisiCp073 NADH dehydrogenase subunit 4
blastp_kegg lcl|tcc:ThcaC_p074 34 530 + 497 none 99.40 500 86.92 0.0 ndhD NADH-plastoquinone oxidoreductase subunit 4
blastp_kegg lcl|mtr:MTR_7g021720 20 529 + 510 none 86.88 587 81.96 0.0 Photosystem I iron-sulfur center
blastp_kegg lcl|pop:Poptr_cp079 34 530 + 497 none 99.40 500 83.50 0.0 ndhD NADH dehydrogenase subunit 4 (EC:1.6.5.3)
blastp_pdb 3rko_C 37 529 + 493 Gaps:32 97.64 509 34.41 7e-76 mol:protein length:509 NADH-QUINONE OXIDOREDUCTASE SUBUNIT M
blastp_pdb 3rko_M 37 529 + 493 Gaps:32 97.64 509 34.41 7e-76 mol:protein length:509 NADH-QUINONE OXIDOREDUCTASE SUBUNIT M
blastp_pdb 3rko_B 100 481 + 382 Gaps:37 62.15 613 25.20 7e-10 mol:protein length:613 NADH-QUINONE OXIDOREDUCTASE SUBUNIT L
blastp_pdb 3rko_L 100 481 + 382 Gaps:37 62.15 613 25.20 7e-10 mol:protein length:613 NADH-QUINONE OXIDOREDUCTASE SUBUNIT L
blastp_pdb 3rko_D 114 352 + 239 Gaps:20 50.52 485 26.53 4e-07 mol:protein length:485 NADH-QUINONE OXIDOREDUCTASE SUBUNIT N
blastp_pdb 3rko_N 114 352 + 239 Gaps:20 50.52 485 26.53 4e-07 mol:protein length:485 NADH-QUINONE OXIDOREDUCTASE SUBUNIT N
blastp_uniprot_sprot sp|Q09WW8|NU4C_MORIN 34 530 + 497 none 99.40 500 86.32 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Morus indica GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q68RV6|NU4C_PANGI 34 530 + 497 none 99.40 500 85.51 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Panax ginseng GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q2A7B8|NU4C_SOLLC 34 530 + 497 none 99.40 500 85.51 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Solanum lycopersicum GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q2VED0|NU4C_SOLTU 34 530 + 497 none 99.40 500 85.31 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Solanum tuberosum GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q33BX2|NU4C_NICTO 34 530 + 497 none 99.40 500 85.31 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Nicotiana tomentosiformis GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q8S8U7|NU4C_ATRBE 34 530 + 497 none 99.40 500 85.11 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Atropa belladonna GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|B1NWJ9|NU4C_MANES 34 530 + 497 none 99.40 500 85.51 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Manihot esculenta GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|P06262|NU4C_TOBAC 34 530 + 497 none 99.40 500 85.31 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Nicotiana tabacum GN ndhD PE 2 SV 2
blastp_uniprot_sprot sp|Q3C1Q4|NU4C_NICSY 34 530 + 497 none 99.40 500 85.31 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Nicotiana sylvestris GN ndhD PE 3 SV 1
blastp_uniprot_sprot sp|Q1KXG6|NU4C_LACSA 34 530 + 497 none 99.40 500 84.31 0.0 NAD(P)H-quinone oxidoreductase chain 4 chloroplastic OS Lactuca sativa GN ndhD PE 3 SV 1
rpsblast_cdd gnl|CDD|176954 33 530 + 498 none 100.00 498 85.94 0.0 CHL00011 ndhD NADH dehydrogenase subunit 4.
rpsblast_cdd gnl|CDD|179442 36 527 + 492 Gaps:3 93.90 525 52.54 1e-161 PRK02546 PRK02546 NAD(P)H-quinone oxidoreductase subunit 4 Provisional.
rpsblast_cdd gnl|CDD|183596 59 511 + 453 Gaps:2 89.88 504 51.66 1e-154 PRK12561 PRK12561 NAD(P)H-quinone oxidoreductase subunit 4 Provisional.
rpsblast_cdd gnl|CDD|200147 39 529 + 491 Gaps:12 100.00 481 38.67 1e-112 TIGR01972 NDH_I_M proton-translocating NADH-quinone oxidoreductase chain M. This model describes the 13th (based on E. coli) structural gene M of bacterial NADH dehydrogenase I as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex.

42 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 35 55 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 337 356 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 243 266 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 452 474 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 11 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 30 34 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 402 420 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 199 223 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 36 530 495 PTHR22773 none none none
Phobius 357 361 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 362 381 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 39 528 490 TIGR01972 none NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M IPR010227
Phobius 67 87 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 278 296 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 144 161 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 267 277 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PRINTS 271 295 25 PR01437 none NADH-ubiquinone oxidoreductase subunit 4 signature IPR003918
PRINTS 199 223 25 PR01437 none NADH-ubiquinone oxidoreductase subunit 4 signature IPR003918
PRINTS 359 378 20 PR01437 none NADH-ubiquinone oxidoreductase subunit 4 signature IPR003918
PRINTS 411 437 27 PR01437 none NADH-ubiquinone oxidoreductase subunit 4 signature IPR003918
PRINTS 169 188 20 PR01437 none NADH-ubiquinone oxidoreductase subunit 4 signature IPR003918
Phobius 494 515 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 12 29 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 446 451 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 326 336 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 36 530 495 PTHR22773:SF74 none none none
Phobius 188 198 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 516 531 16 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 56 66 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 88 116 29 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

14 Localization

Analysis Start End Length
TMHMM 397 419 22
TMHMM 494 516 22
TMHMM 13 30 17
TMHMM 363 385 22
TMHMM 423 445 22
TMHMM 275 294 19
TMHMM 34 56 22
TMHMM 233 255 22
TMHMM 452 474 22
TMHMM 117 139 22
TMHMM 167 189 22
TMHMM 199 221 22
TMHMM 307 326 19
TMHMM 63 85 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 82   Secretory pathway 4 0.725 0.418 NON-PLANT 82