2 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0005524 | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
| GO:0009507 | chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. |
22 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pmum:18668109 | 1 | 2252 | + | 2252 | Gaps:40 | 74.35 | 2277 | 94.27 | 0.0 | ycf2 CP95_p003 hypothetical chloroplast RF21 |
| blastp_kegg | lcl|pmum:18668076 | 1 | 2252 | + | 2252 | Gaps:40 | 74.35 | 2277 | 94.27 | 0.0 | ycf2 CP95_p023 hypothetical chloroplast RF21 |
| blastp_kegg | lcl|pper:PrpeC_p083 | 1 | 2252 | + | 2252 | Gaps:40 | 74.35 | 2277 | 94.21 | 0.0 | ycf2 hypothetical chloroplast RF2 |
| blastp_kegg | lcl|pper:PrpeC_p065 | 1 | 2252 | + | 2252 | Gaps:40 | 74.35 | 2277 | 94.21 | 0.0 | ycf2 hypothetical chloroplast RF2 |
| blastp_kegg | lcl|vvi:4025017 | 1 | 2252 | + | 2252 | Gaps:28 | 73.91 | 2300 | 93.41 | 0.0 | ycf2 ViviCp086 Ycf2 |
| blastp_kegg | lcl|vvi:4025027 | 1 | 2252 | + | 2252 | Gaps:28 | 73.91 | 2300 | 93.41 | 0.0 | ycf2 ViviCp066 Ycf2 |
| blastp_kegg | lcl|tcc:ThcaC_p080 | 1 | 2252 | + | 2252 | Gaps:31 | 73.80 | 2298 | 93.28 | 0.0 | ycf2 hypothetical chloroplast RF21 |
| blastp_kegg | lcl|tcc:ThcaC_p063 | 1 | 2252 | + | 2252 | Gaps:31 | 73.80 | 2298 | 93.28 | 0.0 | ycf2 hypothetical chloroplast RF21 |
| blastp_kegg | lcl|pop:Poptr_cp098 | 1 | 2252 | + | 2252 | Gaps:29 | 74.31 | 2285 | 92.70 | 0.0 | ycf2 Ycf2 |
| blastp_kegg | lcl|pop:Poptr_cp066 | 1 | 2252 | + | 2252 | Gaps:29 | 74.31 | 2285 | 92.70 | 0.0 | ycf2 Ycf2 |
| blastp_uniprot_sprot | sp|Q09WV7|YCF2_MORIN | 1 | 2250 | + | 2250 | Gaps:32 | 74.17 | 2292 | 94.06 | 0.0 | Protein Ycf2 OS Morus indica GN ycf2-A PE 3 SV 1 |
| blastp_uniprot_sprot | sp|Q0ZIV6|YCF2_VITVI | 1 | 2252 | + | 2252 | Gaps:28 | 73.91 | 2300 | 93.41 | 0.0 | Protein Ycf2 OS Vitis vinifera GN ycf2-A PE 3 SV 1 |
| blastp_uniprot_sprot | sp|B1A978|YCF2_CARPA | 1 | 2252 | + | 2252 | Gaps:27 | 73.89 | 2298 | 93.58 | 0.0 | Protein Ycf2 OS Carica papaya GN ycf2-A PE 3 SV 1 |
| blastp_uniprot_sprot | sp|A4GYV4|YCF2_POPTR | 1 | 2252 | + | 2252 | Gaps:29 | 74.31 | 2285 | 92.70 | 0.0 | Protein Ycf2 OS Populus trichocarpa GN ycf2-1 PE 3 SV 1 |
| blastp_uniprot_sprot | sp|Q14F97|YCF2_POPAL | 1 | 2252 | + | 2252 | Gaps:32 | 74.28 | 2282 | 92.57 | 0.0 | Protein Ycf2 OS Populus alba GN ycf2-A PE 3 SV 1 |
| blastp_uniprot_sprot | sp|Q2L949|YCF2_GOSHI | 1 | 2252 | + | 2252 | Gaps:35 | 73.80 | 2298 | 92.45 | 0.0 | Protein Ycf2 OS Gossypium hirsutum GN ycf2-A PE 3 SV 1 |
| blastp_uniprot_sprot | sp|Q49KT6|YCF2_EUCGG | 1 | 2252 | + | 2252 | Gaps:31 | 74.34 | 2280 | 92.51 | 0.0 | Protein Ycf2 OS Eucalyptus globulus subsp. globulus GN ycf2-A PE 3 SV 1 |
| blastp_uniprot_sprot | sp|Q09MB4|YCF2_CITSI | 1 | 2252 | + | 2252 | Gaps:32 | 74.01 | 2282 | 92.01 | 0.0 | Protein Ycf2 OS Citrus sinensis GN ycf2-A PE 3 SV 1 |
| blastp_uniprot_sprot | sp|B1NWJ3|YCF2_MANES | 1 | 2252 | + | 2252 | Gaps:47 | 73.57 | 2312 | 91.89 | 0.0 | Protein Ycf2 OS Manihot esculenta GN ycf2 PE 3 SV 1 |
| blastp_uniprot_sprot | sp|A0ZZ78|YCF2_GOSBA | 1 | 2252 | + | 2252 | Gaps:35 | 73.80 | 2298 | 92.10 | 0.0 | Protein Ycf2 OS Gossypium barbadense GN ycf2-A PE 3 SV 1 |
| rpsblast_cdd | gnl|CDD|177097 | 1 | 2252 | + | 2252 | Gaps:26 | 74.44 | 2281 | 94.23 | 0.0 | CHL00206 ycf2 Ycf2 Provisional. |
| rpsblast_cdd | gnl|CDD|147703 | 1 | 1686 | + | 1686 | Gaps:119 | 70.34 | 1170 | 78.98 | 0.0 | pfam05695 DUF825 Plant protein of unknown function (DUF825). This family consists of several plant proteins greater than 1000 residues in length. The function of this family is unknown. |
13 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Phobius | 70 | 88 | 19 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Pfam | 1692 | 1770 | 79 | PF00004 | none | ATPase family associated with various cellular activities (AAA) | IPR003959 |
| Phobius | 1451 | 2252 | 802 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Phobius | 628 | 646 | 19 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| SUPERFAMILY | 1689 | 1846 | 158 | SSF52540 | none | none | IPR027417 |
| Gene3D | 1693 | 1769 | 77 | G3DSA:3.40.50.300 | none | none | IPR027417 |
| Phobius | 89 | 627 | 539 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Phobius | 1428 | 1450 | 23 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Pfam | 1 | 624 | 624 | PF05695 | none | Plant protein of unknown function (DUF825) | IPR008543 |
| Pfam | 625 | 1686 | 1062 | PF05695 | none | Plant protein of unknown function (DUF825) | IPR008543 |
| Phobius | 1 | 69 | 69 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Phobius | 647 | 1427 | 781 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Hamap | 1 | 2252 | 2252 | MF_01330 | none | Protein Ycf2 [ycf2]. | IPR008543 |
8 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran1_2004_QTL1_peak_Bud_burst_A4 | Qrob_Chr01 | 1 | s_1AMVCC_444 | s_1BE1VC_321 | 4 | 0 | 31 | lod | 3,2 | 7,4 |
| Bourran2_2003_QTL8_peak_Bud_burst_A4 | Qrob_Chr01 | 1 | s_1AH7I_610 | s_1BE1VC_321 | 4,6 | 0 | 28 | lod | 3,5 | 7,4 |
| Bourran2_2007_QTL6_peak_Bud_burst_3P | Qrob_Chr01 | 1 | s_1BE1VC_321 | s_1A5JRZ_890 | 5 | 0 | 25 | lod | 2,4 | 6 |
| Bourran2_2014_nEpiBC_3P | Qrob_Chr01 | 1 | v_1588_550 | s_1AZJRA_1600 | 30,48 | 9,48 | 43,98 | lod | 2,3642 | 6,3 |
| Bourran2_2014_nLBD*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 34,91 | 16,12 | 53,62 | lod | 2,4961 | 5,2 |
| Bourran2_2014_nSecLBD_3P | Qrob_Chr08 | 8 | s_1BN2OD_551 | s_1B5AYF_599 | 17,17 | 0 | 43,51 | lod | 1,9229 | 4,4 |
| Bourran2_2014_rEpiBC*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 35,77 | 14,11 | 55,31 | lod | 2,9413 | 6,2 |
| Bourran2_2015_nEpiBC_3P | Qrob_Chr12 | 12 | s_1B73S5_217 | v_7050_211 | 28,31 | 26,37 | 28,45 | lod | 4.5 | 11.6 |
