Protein : Qrob_P0268380.2 Q. robur
Protein Identifier  ? Qrob_P0268380.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=11) PTHR11654:SF94 - PROTEIN NRT1/ PTR FAMILY 5.10-RELATED (PTHR11654:SF94) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 293  
Kegg Orthology  K14638
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0006857 oligopeptide transport The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103339078 3 292 + 290 Gaps:1 50.87 572 70.10 5e-134 protein NRT1/ PTR FAMILY 5.10-like
blastp_kegg lcl|pper:PRUPE_ppa003472mg 3 292 + 290 Gaps:1 50.87 572 69.07 7e-130 hypothetical protein
blastp_kegg lcl|vvi:100854655 4 292 + 289 Gaps:4 50.87 572 68.04 4e-128 probable peptide/nitrate transporter At1g22540-like
blastp_kegg lcl|mdm:103402195 4 292 + 289 Gaps:17 54.09 684 73.78 4e-127 protein NRT1/ PTR FAMILY 5.10-like
blastp_kegg lcl|cic:CICLE_v10000719mg 1 292 + 292 Gaps:6 51.32 569 64.38 7e-126 hypothetical protein
blastp_kegg lcl|cit:102615123 1 292 + 292 Gaps:6 51.32 569 64.38 8e-126 probable peptide/nitrate transporter At1g22540-like
blastp_kegg lcl|pxb:103952548 4 292 + 289 Gaps:17 49.19 557 72.26 6e-125 protein NRT1/ PTR FAMILY 5.10-like
blastp_kegg lcl|pxb:103952552 4 292 + 289 Gaps:17 49.19 557 72.99 7e-125 protein NRT1/ PTR FAMILY 5.10-like
blastp_kegg lcl|vvi:100854725 4 292 + 289 Gaps:4 50.87 572 68.73 4e-124 probable peptide/nitrate transporter At1g22540-like
blastp_kegg lcl|tcc:TCM_036497 4 292 + 289 Gaps:2 50.96 571 64.95 2e-122 Major facilitator superfamily protein
blastp_pdb 2xut_C 32 251 + 220 Gaps:31 38.36 524 34.33 9e-22 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_pdb 2xut_B 32 251 + 220 Gaps:31 38.36 524 34.33 9e-22 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_pdb 2xut_A 32 251 + 220 Gaps:31 38.36 524 34.33 9e-22 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_uniprot_sprot sp|Q0WP01|PTR9_ARATH 5 278 + 274 Gaps:9 47.94 557 64.04 3e-104 Protein NRT1/ PTR FAMILY 5.10 OS Arabidopsis thaliana GN NPF5.10 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SK99|PTR11_ARATH 4 276 + 273 Gaps:7 48.85 565 58.70 2e-96 Protein NRT1/ PTR FAMILY 5.15 OS Arabidopsis thaliana GN NPF5.15 PE 2 SV 1
blastp_uniprot_sprot sp|Q0WSZ6|PTR23_ARATH 4 282 + 279 Gaps:12 49.38 561 57.76 7e-93 Protein NRT1/ PTR FAMILY 5.13 OS Arabidopsis thaliana GN NPF5.13 PE 2 SV 2
blastp_uniprot_sprot sp|Q8VZE2|PTR22_ARATH 4 287 + 284 Gaps:10 50.27 557 57.14 1e-92 Protein NRT1/ PTR FAMILY 5.14 OS Arabidopsis thaliana GN NPF5.14 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SK96|PTR10_ARATH 4 269 + 266 Gaps:4 47.87 564 56.67 6e-90 Protein NRT1/ PTR FAMILY 5.16 OS Arabidopsis thaliana GN NPF5.16 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C7U1|PTR25_ARATH 15 292 + 278 Gaps:17 49.55 555 51.64 2e-84 Protein NRT1/ PTR FAMILY 5.12 OS Arabidopsis thaliana GN NPF5.12 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RX67|PTR24_ARATH 18 292 + 275 Gaps:15 50.19 538 54.44 3e-79 Protein NRT1/ PTR FAMILY 5.11 OS Arabidopsis thaliana GN NPF5.11 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M1I2|PTR46_ARATH 25 290 + 266 Gaps:21 45.59 555 46.64 3e-72 Protein NRT1/ PTR FAMILY 5.4 OS Arabidopsis thaliana GN NPF5.4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FNL8|PTR4_ARATH 11 287 + 277 Gaps:18 48.63 586 41.40 5e-68 Protein NRT1/ PTR FAMILY 5.3 OS Arabidopsis thaliana GN NPF5.3 PE 2 SV 1
blastp_uniprot_sprot sp|P0CI03|PTR28_ARATH 14 282 + 269 Gaps:6 46.09 575 41.89 6e-67 Protein NRT1/ PTR FAMILY 5.6 OS Arabidopsis thaliana GN NPF5.6 PE 2 SV 1
rpsblast_cdd gnl|CDD|144446 99 270 + 172 Gaps:19 41.13 372 43.14 2e-30 pfam00854 PTR2 POT family. The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters.
rpsblast_cdd gnl|CDD|32918 34 241 + 208 Gaps:30 37.75 498 32.98 1e-25 COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|162112 46 272 + 227 Gaps:36 32.87 654 32.09 2e-25 TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics the antitumor agent bestatin and various protease inhibitors).
rpsblast_cdd gnl|CDD|185359 32 244 + 213 Gaps:26 37.93 493 30.48 3e-16 PRK15462 PRK15462 dipeptide/tripeptide permease D Provisional.
rpsblast_cdd gnl|CDD|162111 40 244 + 205 Gaps:28 38.11 475 28.18 1e-13 TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter) bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters although they are found in yeast plants and animals. They function by proton symport in a 1:1 stoichiometry which is variable in different species. All of them are predicted to contain 12 transmembrane domains for which limited experimental evidence exists.
rpsblast_cdd gnl|CDD|181969 40 274 + 235 Gaps:34 43.40 500 24.42 2e-07 PRK09584 tppB putative tripeptide transporter permease Reviewed.
rpsblast_kog gnl|CDD|36451 1 292 + 292 Gaps:8 52.19 571 41.28 1e-73 KOG1237 KOG1237 KOG1237 H+/oligopeptide symporter [Amino acid transport and metabolism].

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 13 269 257 PTHR11654 "Reactome:REACT_15518","Reactome:REACT_19419";signature_desc=OLIGOPEPTIDE TRANSPORTER-RELATED none IPR000109
SUPERFAMILY 26 266 241 SSF103473 none none IPR020846
Phobius 77 96 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 143 161 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 211 215 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 88 112 25 PS01022 "Reactome:REACT_15518","Reactome:REACT_19419" PTR2 family proton/oligopeptide symporters signature 1. IPR018456
PANTHER 13 269 257 PTHR11654:SF94 none none none
Phobius 97 102 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 216 236 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 103 123 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 124 142 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 76 76 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 191 210 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 99 269 171 PF00854 "Reactome:REACT_15518","Reactome:REACT_19419" POT family IPR000109
Gene3D 46 242 197 G3DSA:1.20.1250.20 none none none
Phobius 162 190 29 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 237 292 56 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

5 Localization

Analysis Start End Length
TMHMM 188 210 22
TMHMM 140 157 17
TMHMM 214 236 22
TMHMM 103 125 22
TMHMM 74 96 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting