Protein : Qrob_P0268320.2 Q. robur
Protein Identifier  ? Qrob_P0268320.2 Organism . Name  Quercus robur
Score  19.3 Score Type  egn
Protein Description  (M=11) PTHR11654:SF94 - PROTEIN NRT1/ PTR FAMILY 5.10-RELATED (PTHR11654:SF94) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 534  
Kegg Orthology  K14638
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0006857 oligopeptide transport The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103339078 3 522 + 520 Gaps:38 97.55 572 66.31 0.0 protein NRT1/ PTR FAMILY 5.10-like
blastp_kegg lcl|pper:PRUPE_ppa003472mg 3 522 + 520 Gaps:38 97.55 572 65.95 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_036497 4 522 + 519 Gaps:39 97.72 571 65.23 0.0 Major facilitator superfamily protein
blastp_kegg lcl|cit:102615123 1 522 + 522 Gaps:43 98.24 569 64.58 0.0 probable peptide/nitrate transporter At1g22540-like
blastp_kegg lcl|cic:CICLE_v10000719mg 1 522 + 522 Gaps:43 98.24 569 64.58 0.0 hypothetical protein
blastp_kegg lcl|vvi:100854655 4 522 + 519 Gaps:41 97.55 572 65.23 0.0 probable peptide/nitrate transporter At1g22540-like
blastp_kegg lcl|sot:102597245 4 522 + 519 Gaps:41 97.54 568 62.09 0.0 probable peptide/nitrate transporter At1g22540-like
blastp_kegg lcl|pop:POPTR_0013s11120g 2 522 + 521 Gaps:39 98.77 567 65.36 0.0 hypothetical protein
blastp_kegg lcl|pxb:103952552 4 521 + 518 Gaps:54 96.95 557 67.22 0.0 protein NRT1/ PTR FAMILY 5.10-like
blastp_kegg lcl|mdm:103402195 4 521 + 518 Gaps:54 92.98 684 68.40 0.0 protein NRT1/ PTR FAMILY 5.10-like
blastp_pdb 2xut_C 32 461 + 430 Gaps:95 84.54 524 26.19 6e-21 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_pdb 2xut_B 32 461 + 430 Gaps:95 84.54 524 26.19 6e-21 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_pdb 2xut_A 32 461 + 430 Gaps:95 84.54 524 26.19 6e-21 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_uniprot_sprot sp|Q0WP01|PTR9_ARATH 5 522 + 518 Gaps:40 97.31 557 62.36 0.0 Protein NRT1/ PTR FAMILY 5.10 OS Arabidopsis thaliana GN NPF5.10 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C7U1|PTR25_ARATH 15 524 + 510 Gaps:48 96.22 555 55.81 0.0 Protein NRT1/ PTR FAMILY 5.12 OS Arabidopsis thaliana GN NPF5.12 PE 2 SV 1
blastp_uniprot_sprot sp|Q0WSZ6|PTR23_ARATH 4 522 + 519 Gaps:51 98.40 561 54.71 0.0 Protein NRT1/ PTR FAMILY 5.13 OS Arabidopsis thaliana GN NPF5.13 PE 2 SV 2
blastp_uniprot_sprot sp|Q8VZE2|PTR22_ARATH 4 522 + 519 Gaps:51 98.38 557 55.29 0.0 Protein NRT1/ PTR FAMILY 5.14 OS Arabidopsis thaliana GN NPF5.14 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SK96|PTR10_ARATH 4 522 + 519 Gaps:49 98.23 564 53.43 0.0 Protein NRT1/ PTR FAMILY 5.16 OS Arabidopsis thaliana GN NPF5.16 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SK99|PTR11_ARATH 4 522 + 519 Gaps:46 98.23 565 53.15 0.0 Protein NRT1/ PTR FAMILY 5.15 OS Arabidopsis thaliana GN NPF5.15 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RX67|PTR24_ARATH 18 522 + 505 Gaps:53 96.65 538 55.58 0.0 Protein NRT1/ PTR FAMILY 5.11 OS Arabidopsis thaliana GN NPF5.11 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M1I2|PTR46_ARATH 25 522 + 498 Gaps:72 96.22 555 42.88 4e-155 Protein NRT1/ PTR FAMILY 5.4 OS Arabidopsis thaliana GN NPF5.4 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VZR7|PTR30_ARATH 11 521 + 511 Gaps:47 94.00 583 39.78 7e-131 Protein NRT1/ PTR FAMILY 5.1 OS Arabidopsis thaliana GN NPF5.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFB8|PTR5_ARATH 11 522 + 512 Gaps:58 97.54 570 38.67 5e-130 Protein NRT1/ PTR FAMILY 8.2 OS Arabidopsis thaliana GN NPF8.2 PE 2 SV 1
rpsblast_cdd gnl|CDD|144446 99 457 + 359 Gaps:67 100.00 372 31.18 1e-54 pfam00854 PTR2 POT family. The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters.
rpsblast_cdd gnl|CDD|32918 34 469 + 436 Gaps:94 86.35 498 25.58 1e-28 COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|162112 46 399 + 354 Gaps:64 53.52 654 26.00 1e-27 TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics the antitumor agent bestatin and various protease inhibitors).
rpsblast_cdd gnl|CDD|185359 32 244 + 213 Gaps:26 37.93 493 28.34 9e-15 PRK15462 PRK15462 dipeptide/tripeptide permease D Provisional.
rpsblast_cdd gnl|CDD|162111 40 244 + 205 Gaps:28 38.11 475 27.62 5e-12 TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter) bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters although they are found in yeast plants and animals. They function by proton symport in a 1:1 stoichiometry which is variable in different species. All of them are predicted to contain 12 transmembrane domains for which limited experimental evidence exists.
rpsblast_kog gnl|CDD|36451 1 524 + 524 Gaps:59 99.30 571 43.92 1e-139 KOG1237 KOG1237 KOG1237 H+/oligopeptide symporter [Amino acid transport and metabolism].

27 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 138 158 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 388 449 62 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 366 387 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 99 118 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 347 365 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 88 112 25 PS01022 "Reactome:REACT_15518","Reactome:REACT_19419" PTR2 family proton/oligopeptide symporters signature 1. IPR018456
SUPERFAMILY 26 246 221 SSF103473 none none IPR020846
SUPERFAMILY 305 516 212 SSF103473 none none IPR020846
Phobius 472 494 23 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 191 210 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 515 533 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 99 327 229 PF00854 "Reactome:REACT_15518","Reactome:REACT_19419" POT family IPR000109
Phobius 74 92 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 320 346 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 211 215 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 119 137 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 237 319 83 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 93 98 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 216 236 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 73 73 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 159 190 32 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 367 515 149 G3DSA:1.20.1250.20 none none none
PANTHER 13 522 510 PTHR11654:SF94 none none none
Phobius 450 471 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 13 522 510 PTHR11654 "Reactome:REACT_15518","Reactome:REACT_19419";signature_desc=OLIGOPEPTIDE TRANSPORTER-RELATED none IPR000109
Gene3D 46 243 198 G3DSA:1.20.1250.20 none none none
Phobius 495 514 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

9 Localization

Analysis Start End Length
TMHMM 365 387 22
TMHMM 493 515 22
TMHMM 103 125 22
TMHMM 321 343 22
TMHMM 188 210 22
TMHMM 140 157 17
TMHMM 449 471 22
TMHMM 74 96 22
TMHMM 214 236 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting