Protein : Qrob_P0266830.2 Q. robur
Protein Identifier  ? Qrob_P0266830.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR11638:SF69 - ENDOPEPTIDASE CLP ATP-BINDING CHAIN Gene Prediction Quality  validated
Protein length 

Sequence

Length: 864  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0019538 protein metabolic process The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0010s24800g 1 863 + 863 Gaps:18 99.88 854 67.76 0.0 POPTRDRAFT_770773 hypothetical protein
blastp_kegg lcl|tcc:TCM_044328 1 863 + 863 Gaps:29 100.00 846 67.02 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein putative
blastp_kegg lcl|vvi:100254493 1 863 + 863 Gaps:23 100.00 848 63.92 0.0 chaperone protein ClpB1-like
blastp_kegg lcl|rcu:RCOM_1652480 1 863 + 863 Gaps:17 100.00 864 65.51 0.0 hypothetical protein
blastp_kegg lcl|vvi:100254987 1 863 + 863 Gaps:33 100.00 840 66.55 0.0 uncharacterized LOC100254987
blastp_kegg lcl|gmx:100800986 1 862 + 862 Gaps:39 99.88 852 62.75 0.0 uncharacterized LOC100800986
blastp_kegg lcl|pvu:PHAVU_007G138900g 1 863 + 863 Gaps:27 100.00 844 61.97 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_022872 1 863 + 863 Gaps:12 100.00 857 58.58 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
blastp_kegg lcl|gmx:100818716 1 863 + 863 Gaps:38 100.00 865 62.08 0.0 uncharacterized LOC100818716
blastp_kegg lcl|pvu:PHAVU_007G234700g 1 860 + 860 Gaps:31 100.00 859 59.37 0.0 hypothetical protein
blastp_uniprot_sprot sp|P42730|CLPB1_ARATH 20 317 + 298 Gaps:33 29.75 911 28.78 2e-16 Chaperone protein ClpB1 OS Arabidopsis thaliana GN CLPB1 PE 1 SV 2
blastp_uniprot_sprot sp|Q6F2Y7|CLPB1_ORYSJ 26 317 + 292 Gaps:33 29.28 912 28.84 1e-13 Chaperone protein ClpB1 OS Oryza sativa subsp. japonica GN CLPB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q88VX7|CLPB_LACPL 133 788 + 656 Gaps:103 70.47 867 23.08 1e-13 Chaperone protein ClpB OS Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN clpB PE 3 SV 1
blastp_uniprot_sprot sp|Q8G4X4|CLPB_BIFLO 8 788 + 781 Gaps:66 59.62 889 25.85 3e-08 Chaperone protein ClpB OS Bifidobacterium longum (strain NCC 2705) GN clpB PE 3 SV 1
blastp_uniprot_sprot sp|Q9KU18|CLPB_VIBCH 593 793 + 201 Gaps:25 22.40 857 27.60 4e-08 Chaperone protein ClpB OS Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN clpB PE 3 SV 1
blastp_uniprot_sprot sp|Q7VBL0|CLPB_PROMA 217 788 + 572 Gaps:85 62.85 864 22.28 7e-08 Chaperone protein ClpB OS Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN clpB PE 3 SV 1
blastp_uniprot_sprot sp|Q7MNK1|CLPB_VIBVY 598 793 + 196 Gaps:25 21.82 857 28.34 8e-08 Chaperone protein ClpB OS Vibrio vulnificus (strain YJ016) GN clpB PE 3 SV 1
blastp_uniprot_sprot sp|Q8DEV2|CLPB_VIBVU 598 793 + 196 Gaps:25 21.82 857 28.34 8e-08 Chaperone protein ClpB OS Vibrio vulnificus (strain CMCP6) GN clpB PE 3 SV 1
blastp_uniprot_sprot sp|Q6LMY0|CLPB_PHOPR 594 788 + 195 Gaps:25 21.70 857 27.42 1e-07 Chaperone protein ClpB OS Photobacterium profundum GN clpB PE 3 SV 2
blastp_uniprot_sprot sp|P44403|CLPB_HAEIN 598 788 + 191 Gaps:25 21.26 856 26.92 2e-07 Chaperone protein ClpB OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN clpB PE 3 SV 1
rpsblast_cdd gnl|CDD|30888 12 821 + 810 Gaps:86 62.34 786 24.69 2e-11 COG0542 ClpA ATPases with chaperone activity ATP-binding subunit [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|163223 12 167 + 156 Gaps:23 15.85 852 33.33 3e-09 TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease but rather serves to disaggregate misfolded and aggregated proteins.
rpsblast_cdd gnl|CDD|163222 12 275 + 264 Gaps:47 29.23 852 24.50 9e-07 TIGR03345 VI_ClpV1 type VI secretion ATPase ClpV1 family. Members of this protein family are homologs of ClpB an ATPase associated with chaperone-related functions. These ClpB homologs designated ClpV1 are a key component of the bacterial pathogenicity-associated type VI secretion system.
rpsblast_kog gnl|CDD|36269 1 860 + 860 Gaps:118 89.98 898 34.28 1e-119 KOG1051 KOG1051 KOG1051 Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification protein turnover chaperones].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 13 16 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 6 527 522 PTHR11638:SF69 none none none
Phobius 1 16 16 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 6 527 522 PTHR11638 none none none
SUPERFAMILY 12 163 152 SSF81923 none none none
PANTHER 583 789 207 PTHR11638:SF69 none none none
Pfam 130 167 38 PF02861 none Clp amino terminal domain IPR004176
Pfam 23 54 32 PF02861 none Clp amino terminal domain IPR004176
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 12 166 155 G3DSA:1.10.1780.10 none none IPR023150
PANTHER 583 789 207 PTHR11638 none none none
Phobius 17 863 847 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 624 788 165 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 621 790 170 SSF52540 none none IPR027417
Phobius 4 12 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting