Protein : Qrob_P0265050.2 Q. robur
Protein Identifier  ? Qrob_P0265050.2 Organism . Name  Quercus robur
Score  99.1 Score Type  egn
Protein Description  (M=1) KOG1058//KOG1059//KOG1060//KOG1061//KOG1077 - Vesicle coat complex COPI beta subunit [Intracellular trafficking secretion and vesicular transport]. // Vesicle coat complex AP-3 delta subunit [Intracellular trafficking secretion and vesicular transport]. // Vesicle coat complex AP-3 beta subunit [Intracellular trafficking secretion and vesicular transport]. // Vesicle coat complex AP-1/AP-2/AP-4 beta subunit [Intracellular trafficking secretion and vesicular transport]. // Vesicle coat complex AP-2 alpha subunit [Intracellular trafficking secretion and vesicular transport]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 523  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0008565 protein transporter activity Enables the directed movement of proteins into, out of or within a cell, or between cells.
GO:0030117 membrane coat Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100801153 3 494 + 492 Gaps:7 59.05 845 91.38 0.0 beta-adaptin-like protein A-like
blastp_kegg lcl|gmx:100809730 3 494 + 492 Gaps:7 59.05 845 91.58 0.0 beta-adaptin-like protein A-like
blastp_kegg lcl|cic:CICLE_v10007447mg 1 494 + 494 Gaps:7 59.64 840 90.82 0.0 hypothetical protein
blastp_kegg lcl|cit:102616976 1 494 + 494 Gaps:7 59.64 840 90.82 0.0 beta-adaptin-like protein A-like
blastp_kegg lcl|cam:101507824 1 504 + 504 Gaps:9 60.47 845 89.04 0.0 beta-adaptin-like protein A-like
blastp_kegg lcl|rcu:RCOM_0803100 1 494 + 494 Gaps:7 59.08 848 90.42 0.0 AP-2 complex subunit beta-1 putative
blastp_kegg lcl|vvi:100252486 1 504 + 504 Gaps:8 60.43 844 89.41 0.0 beta-adaptin-like protein A
blastp_kegg lcl|fve:101312691 1 494 + 494 Gaps:7 59.22 846 90.22 0.0 beta-adaptin-like protein A-like
blastp_kegg lcl|cmo:103503721 1 494 + 494 Gaps:7 59.08 848 89.62 0.0 beta-adaptin-like protein A
blastp_kegg lcl|pop:POPTR_0006s25970g 1 494 + 494 Gaps:7 59.50 842 89.42 0.0 POPTRDRAFT_819556 hypothetical protein
blastp_pdb 2vgl_B 17 491 + 475 Gaps:30 79.36 591 36.89 6e-93 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkt_E 17 491 + 475 Gaps:30 79.36 591 36.89 6e-93 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkt_B 17 491 + 475 Gaps:30 79.36 591 36.89 6e-93 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkr_E 17 491 + 475 Gaps:30 79.36 591 36.89 6e-93 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkr_B 17 491 + 475 Gaps:30 79.36 591 36.89 6e-93 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2xa7_B 17 491 + 475 Gaps:30 79.22 592 36.89 6e-93 mol:protein length:592 AP-2 COMPLEX SUBUNIT BETA
blastp_pdb 1w63_L 17 491 + 475 Gaps:30 80.31 584 37.31 3e-88 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_pdb 1w63_J 17 491 + 475 Gaps:30 80.31 584 37.31 3e-88 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_pdb 1w63_H 17 491 + 475 Gaps:30 80.31 584 37.31 3e-88 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_pdb 1w63_F 17 491 + 475 Gaps:30 80.31 584 37.31 3e-88 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_uniprot_sprot sp|Q9LDK9|APBLA_ARATH 1 494 + 494 Gaps:7 59.57 841 87.43 0.0 Beta-adaptin-like protein A OS Arabidopsis thaliana GN BETAA-AD PE 1 SV 1
blastp_uniprot_sprot sp|Q9WV76|AP4B1_MOUSE 45 489 + 445 Gaps:23 59.35 738 39.50 1e-96 AP-4 complex subunit beta-1 OS Mus musculus GN Ap4b1 PE 2 SV 2
blastp_uniprot_sprot sp|Q54R84|AP4B_DICDI 19 489 + 471 Gaps:63 58.95 838 36.64 4e-96 AP-4 complex subunit beta OS Dictyostelium discoideum GN ap4b1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9Y6B7|AP4B1_HUMAN 45 489 + 445 Gaps:23 59.27 739 39.50 1e-95 AP-4 complex subunit beta-1 OS Homo sapiens GN AP4B1 PE 1 SV 2
blastp_uniprot_sprot sp|Q54X82|AP1B_DICDI 15 504 + 490 Gaps:46 50.96 942 37.71 1e-90 AP-1 complex subunit beta OS Dictyostelium discoideum GN ap1b1 PE 3 SV 1
blastp_uniprot_sprot sp|P63009|AP2B1_BOVIN 19 491 + 473 Gaps:30 49.84 937 37.04 8e-90 AP-2 complex subunit beta OS Bos taurus GN AP2B1 PE 1 SV 2
blastp_uniprot_sprot sp|O81742|APBLC_ARATH 17 489 + 473 Gaps:28 52.07 893 37.63 1e-89 Beta-adaptin-like protein C OS Arabidopsis thaliana GN BETAC-AD PE 1 SV 2
blastp_uniprot_sprot sp|Q08DS7|AP1B1_BOVIN 19 491 + 473 Gaps:30 49.11 951 37.04 1e-89 AP-1 complex subunit beta-1 OS Bos taurus GN AP2B1 PE 2 SV 1
blastp_uniprot_sprot sp|P62944|AP2B1_RAT 19 491 + 473 Gaps:30 49.84 937 37.04 1e-89 AP-2 complex subunit beta OS Rattus norvegicus GN Ap2b1 PE 1 SV 1
blastp_uniprot_sprot sp|P63010|AP2B1_HUMAN 19 491 + 473 Gaps:30 49.84 937 37.04 1e-89 AP-2 complex subunit beta OS Homo sapiens GN AP2B1 PE 1 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 27 494 468 SSF48371 none none IPR016024
PIRSF 10 506 497 PIRSF002291 none none IPR016342
PANTHER 15 494 480 PTHR11134 none none IPR026739
Gene3D 9 494 486 G3DSA:1.25.10.10 none none IPR011989
PANTHER 15 494 480 PTHR11134:SF4 none none none
Pfam 39 489 451 PF01602 none Adaptin N terminal region IPR002553

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 18   Mitochondrion 5 0.025 0.534 NON-PLANT 18