Protein : Qrob_P0265040.2 Q. robur
Protein Identifier  ? Qrob_P0265040.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=2) PTHR11134:SF4 - ADAPTER-RELATED PROTEIN COMPLEX 4, BETA SUBUNIT Gene Prediction Quality  validated
Protein length 

Sequence

Length: 354  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0030131 clathrin adaptor complex A membrane coat adaptor complex that links clathrin to a membrane.
GO:0030117 membrane coat Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103503721 6 353 + 348 Gaps:4 41.27 848 80.57 0.0 beta-adaptin-like protein A
blastp_kegg lcl|csv:101227292 6 353 + 348 Gaps:4 41.27 848 79.71 0.0 beta-adaptin-like protein A-like
blastp_kegg lcl|pop:POPTR_0006s25970g 4 351 + 348 Gaps:4 40.86 842 82.85 0.0 POPTRDRAFT_819556 hypothetical protein
blastp_kegg lcl|csv:101215264 8 353 + 346 Gaps:4 41.04 848 79.89 0.0 beta-adaptin-like protein A-like
blastp_kegg lcl|tcc:TCM_046915 4 353 + 350 Gaps:7 41.02 841 83.19 0.0 Adaptin family protein
blastp_kegg lcl|pmum:103320172 4 353 + 350 Gaps:3 41.16 843 83.29 0.0 beta-adaptin-like protein A
blastp_kegg lcl|eus:EUTSA_v10012680mg 4 353 + 350 Gaps:6 41.09 842 75.72 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10007447mg 6 352 + 347 Gaps:5 40.71 840 83.92 0.0 hypothetical protein
blastp_kegg lcl|cit:102616976 6 352 + 347 Gaps:5 40.71 840 83.92 0.0 beta-adaptin-like protein A-like
blastp_kegg lcl|mdm:103421161 4 353 + 350 Gaps:4 41.09 842 83.82 0.0 beta-adaptin-like protein A
blastp_pdb 2vgl_B 2 113 + 112 Gaps:3 19.46 591 33.91 2e-09 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkt_E 2 113 + 112 Gaps:3 19.46 591 33.91 2e-09 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkt_B 2 113 + 112 Gaps:3 19.46 591 33.91 2e-09 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkr_E 2 113 + 112 Gaps:3 19.46 591 33.91 2e-09 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2jkr_B 2 113 + 112 Gaps:3 19.46 591 33.91 2e-09 mol:protein length:591 AP-2 COMPLEX SUBUNIT BETA-1
blastp_pdb 2xa7_B 2 113 + 112 Gaps:3 19.43 592 33.91 2e-09 mol:protein length:592 AP-2 COMPLEX SUBUNIT BETA
blastp_pdb 1w63_L 2 110 + 109 Gaps:3 19.18 584 33.04 1e-08 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_pdb 1w63_J 2 110 + 109 Gaps:3 19.18 584 33.04 1e-08 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_pdb 1w63_H 2 110 + 109 Gaps:3 19.18 584 33.04 1e-08 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_pdb 1w63_F 2 110 + 109 Gaps:3 19.18 584 33.04 1e-08 mol:protein length:584 ADAPTER-RELATED PROTEIN COMPLEX 1 BETA 1 SUBU
blastp_uniprot_sprot sp|Q9LDK9|APBLA_ARATH 4 353 + 350 Gaps:7 41.02 841 73.04 4e-168 Beta-adaptin-like protein A OS Arabidopsis thaliana GN BETAA-AD PE 1 SV 1
blastp_uniprot_sprot sp|Q54R84|AP4B_DICDI 8 108 + 101 Gaps:5 12.65 838 38.68 3e-12 AP-4 complex subunit beta OS Dictyostelium discoideum GN ap4b1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9DBG3|AP2B1_MOUSE 2 113 + 112 Gaps:3 12.27 937 33.91 3e-09 AP-2 complex subunit beta OS Mus musculus GN Ap2b1 PE 1 SV 1
blastp_uniprot_sprot sp|P63009|AP2B1_BOVIN 2 113 + 112 Gaps:3 12.27 937 33.91 3e-09 AP-2 complex subunit beta OS Bos taurus GN AP2B1 PE 1 SV 2
blastp_uniprot_sprot sp|P62944|AP2B1_RAT 2 113 + 112 Gaps:3 12.27 937 33.91 3e-09 AP-2 complex subunit beta OS Rattus norvegicus GN Ap2b1 PE 1 SV 1
blastp_uniprot_sprot sp|P63010|AP2B1_HUMAN 2 113 + 112 Gaps:3 12.27 937 33.91 3e-09 AP-2 complex subunit beta OS Homo sapiens GN AP2B1 PE 1 SV 1
blastp_uniprot_sprot sp|Q08DS7|AP1B1_BOVIN 2 113 + 112 Gaps:3 12.09 951 33.91 3e-09 AP-1 complex subunit beta-1 OS Bos taurus GN AP2B1 PE 2 SV 1
blastp_uniprot_sprot sp|Q10567|AP1B1_HUMAN 2 110 + 109 Gaps:3 11.80 949 33.04 1e-08 AP-1 complex subunit beta-1 OS Homo sapiens GN AP1B1 PE 1 SV 2
blastp_uniprot_sprot sp|O35643|AP1B1_MOUSE 2 110 + 109 Gaps:3 11.88 943 33.04 2e-08 AP-1 complex subunit beta-1 OS Mus musculus GN Ap1b1 PE 1 SV 2
blastp_uniprot_sprot sp|P52303|AP1B1_RAT 2 110 + 109 Gaps:3 11.80 949 33.04 2e-08 AP-1 complex subunit beta-1 OS Rattus norvegicus GN Ap1b1 PE 1 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 6 353 348 PTHR11134 none none IPR026739
SUPERFAMILY 6 105 100 SSF48371 none none IPR016024
PANTHER 6 353 348 PTHR11134:SF4 none none none
Gene3D 239 347 109 G3DSA:3.30.310.10 none none IPR012295
SMART 231 348 118 SM01020 none Beta2-adaptin appendage, C-terminal sub-domain IPR015151
Pfam 237 348 112 PF09066 none Beta2-adaptin appendage, C-terminal sub-domain IPR015151
SUPERFAMILY 239 348 110 SSF55711 none none IPR009028
Gene3D 7 114 108 G3DSA:1.25.10.10 none none IPR011989

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Secretory pathway 4 0.502 0.215 NON-PLANT 21