Protein : Qrob_P0264850.2 Q. robur
Protein Identifier  ? Qrob_P0264850.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K15029 - translation initiation factor 3 subunit L Gene Prediction Quality  validated
Protein length 

Sequence

Length: 500  
Kegg Orthology  K15029
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0005852 eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa004079mg 1 499 + 499 Gaps:40 100.00 531 87.38 0.0 hypothetical protein
blastp_kegg lcl|pmum:103320187 1 499 + 499 Gaps:40 100.00 531 87.19 0.0 eukaryotic translation initiation factor 3 subunit L-like
blastp_kegg lcl|cic:CICLE_v10007989mg 2 499 + 498 Gaps:25 99.43 526 87.38 0.0 hypothetical protein
blastp_kegg lcl|cit:102620355 2 499 + 498 Gaps:25 99.43 526 87.38 0.0 eukaryotic translation initiation factor 3 subunit L-like
blastp_kegg lcl|pxb:103957472 1 499 + 499 Gaps:39 100.00 530 86.23 0.0 eukaryotic translation initiation factor 3 subunit L-like
blastp_kegg lcl|tcc:TCM_037154 2 499 + 498 Gaps:28 99.62 520 88.22 0.0 RNA polymerase I-associated factor PAF67 isoform 1
blastp_kegg lcl|mdm:103441176 1 499 + 499 Gaps:39 100.00 530 86.42 0.0 eukaryotic translation initiation factor 3 subunit L-like
blastp_kegg lcl|gmx:100804691 25 499 + 475 Gaps:24 97.08 514 89.98 0.0 eukaryotic translation initiation factor 3 subunit L-like
blastp_kegg lcl|gmx:100786533 25 499 + 475 Gaps:24 96.71 516 89.98 0.0 eukaryotic translation initiation factor 3 subunit L-like
blastp_kegg lcl|pop:POPTR_0006s25800g 2 499 + 498 Gaps:29 99.61 519 87.43 0.0 POPTRDRAFT_802394 hypothetical protein
blastp_uniprot_sprot sp|A7SDW5|EIF3L_NEMVE 32 495 + 464 Gaps:28 89.14 525 46.58 3e-142 Eukaryotic translation initiation factor 3 subunit L OS Nematostella vectensis GN v1g169424 PE 3 SV 1
blastp_uniprot_sprot sp|Q5F428|EIF3L_CHICK 32 484 + 453 Gaps:40 84.57 564 44.65 2e-135 Eukaryotic translation initiation factor 3 subunit L OS Gallus gallus GN EIF3L PE 2 SV 1
blastp_uniprot_sprot sp|Q6P878|EIF3L_XENTR 32 484 + 453 Gaps:40 84.88 562 44.44 2e-135 Eukaryotic translation initiation factor 3 subunit L OS Xenopus tropicalis GN eif3l PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y262|EIF3L_HUMAN 49 484 + 436 Gaps:20 78.01 564 47.27 2e-134 Eukaryotic translation initiation factor 3 subunit L OS Homo sapiens GN EIF3L PE 1 SV 1
blastp_uniprot_sprot sp|Q7T2A5|EIF3L_DANRE 49 484 + 436 Gaps:20 76.39 576 46.82 2e-134 Eukaryotic translation initiation factor 3 subunit L OS Danio rerio GN eif3l PE 2 SV 1
blastp_uniprot_sprot sp|Q8AVJ0|EIF3L_XENLA 49 484 + 436 Gaps:20 78.29 562 47.05 3e-134 Eukaryotic translation initiation factor 3 subunit L OS Xenopus laevis GN eif3l PE 2 SV 1
blastp_uniprot_sprot sp|Q8QZY1|EIF3L_MOUSE 49 484 + 436 Gaps:20 78.01 564 47.27 1e-133 Eukaryotic translation initiation factor 3 subunit L OS Mus musculus GN Eif3l PE 1 SV 1
blastp_uniprot_sprot sp|Q3ZCK1|EIF3L_BOVIN 49 484 + 436 Gaps:20 78.01 564 47.05 2e-133 Eukaryotic translation initiation factor 3 subunit L OS Bos taurus GN EIF3L PE 2 SV 1
blastp_uniprot_sprot sp|A5A6M4|EIF3L_PANTR 49 484 + 436 Gaps:20 78.01 564 47.05 2e-133 Eukaryotic translation initiation factor 3 subunit L OS Pan troglodytes GN EIF3L PE 2 SV 1
blastp_uniprot_sprot sp|Q4PF85|EIF3L_USTMA 32 484 + 453 Gaps:22 69.31 668 42.33 1e-124 Eukaryotic translation initiation factor 3 subunit L OS Ustilago maydis (strain 521 / FGSC 9021) GN UM01228 PE 3 SV 1
rpsblast_cdd gnl|CDD|150861 114 485 + 372 Gaps:19 93.28 402 52.80 1e-144 pfam10255 Paf67 RNA polymerase I-associated factor PAF67. RNA polymerase I is a multisubunit enzyme and its transcription competence is dependent on the presence of PAF67. This family of proteins is conserved from worms to humans.
rpsblast_kog gnl|CDD|38881 32 492 + 461 Gaps:31 88.38 525 40.09 4e-95 KOG3677 KOG3677 KOG3677 RNA polymerase I-associated factor - PAF67 [Translation ribosomal structure and biogenesis Transcription].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 114 485 372 PF10255 none RNA polymerase I-associated factor PAF67 IPR019382
PANTHER 27 485 459 PTHR13242 none none IPR019382

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting