Protein : Qrob_P0264720.2 Q. robur
Protein Identifier  ? Qrob_P0264720.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG2103 - Uncharacterized conserved protein [Function unknown]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 986  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0072546 ER membrane protein complex A transmembrane protein complex that is involved in protein folding in the endoplasmic reticulum. In S. cerevisiae, it has six members: EMC1, EMC2, AIM27, EMC4, KRE27, and EMC6.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103320197 2 985 + 984 none 99.60 988 79.67 0.0 ER membrane protein complex subunit 1
blastp_kegg lcl|pper:PRUPE_ppa000842mg 25 985 + 961 none 97.76 983 80.12 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0802660 3 985 + 983 none 100.00 983 78.23 0.0 catalytic putative
blastp_kegg lcl|pop:POPTR_0018s00550g 1 985 + 985 none 100.00 985 77.46 0.0 POPTRDRAFT_578090 hypothetical protein
blastp_kegg lcl|tcc:TCM_037167 1 985 + 985 Gaps:1 99.80 988 78.90 0.0 Catalytics isoform 1
blastp_kegg lcl|mdm:103441166 1 985 + 985 none 100.00 985 77.77 0.0 ER membrane protein complex subunit 1-like
blastp_kegg lcl|vvi:100264673 1 985 + 985 Gaps:2 100.00 987 78.93 0.0 uncharacterized LOC100264673
blastp_kegg lcl|pxb:103937840 1 985 + 985 none 100.00 985 77.97 0.0 ER membrane protein complex subunit 1-like
blastp_kegg lcl|gmx:100807708 1 985 + 985 Gaps:2 100.00 983 77.01 0.0 ER membrane protein complex subunit 1-like
blastp_kegg lcl|gmx:100790095 1 985 + 985 Gaps:2 100.00 983 76.50 0.0 ER membrane protein complex subunit 1-like
blastp_uniprot_sprot sp|Q5ZL00|EMC1_CHICK 24 985 + 962 Gaps:118 98.47 983 30.99 3e-113 ER membrane protein complex subunit 1 OS Gallus gallus GN EMC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8N766|EMC1_HUMAN 4 985 + 982 Gaps:114 99.50 993 29.96 7e-108 ER membrane protein complex subunit 1 OS Homo sapiens GN EMC1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5R7K6|EMC1_PONAB 4 985 + 982 Gaps:139 99.50 996 30.27 1e-106 ER membrane protein complex subunit 1 OS Pongo abelii GN EMC1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6NRB9|EMC1_XENLA 23 985 + 963 Gaps:105 98.07 987 28.31 3e-104 ER membrane protein complex subunit 1 OS Xenopus laevis GN emc1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8C7X2|EMC1_MOUSE 25 985 + 961 Gaps:123 97.69 997 29.47 2e-102 ER membrane protein complex subunit 1 OS Mus musculus GN Emc1 PE 1 SV 1
blastp_uniprot_sprot sp|O13981|EMC1_SCHPO 675 984 + 310 Gaps:26 32.99 885 31.16 1e-34 ER membrane protein complex subunit 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN emc1 PE 3 SV 1
blastp_uniprot_sprot sp|P25574|EMC1_YEAST 407 984 + 578 Gaps:87 72.24 760 26.05 3e-23 ER membrane protein complex subunit 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN EMC1 PE 1 SV 1
rpsblast_cdd gnl|CDD|191845 766 984 + 219 Gaps:8 100.00 217 43.78 5e-55 pfam07774 DUF1620 Protein of unknown function (DUF1620). These sequences are mainly derived from predicted eukaryotic proteins. The region in question lies towards the C-terminus of these large proteins and is approximately 300 amino acid residues long.
rpsblast_cdd gnl|CDD|205539 52 262 + 211 Gaps:23 86.32 234 23.76 1e-09 pfam13360 PQQ_2 PQQ-like domain. This domain contains several repeats of the PQQ repeat.
rpsblast_kog gnl|CDD|37314 3 985 + 983 Gaps:81 100.00 910 38.02 0.0 KOG2103 KOG2103 KOG2103 Uncharacterized conserved protein [Function unknown].

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 952 975 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 976 985 10 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 7 18 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 489 777 289 SSF50998 none none IPR011047
SMART 707 754 48 SM00564 none beta-propeller repeat IPR018391
SMART 141 172 32 SM00564 none beta-propeller repeat IPR018391
SMART 484 515 32 SM00564 none beta-propeller repeat IPR018391
Phobius 1 23 23 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 19 23 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 24 951 928 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 1 985 985 PTHR21573 none none none
Pfam 766 984 219 PF07774 none Protein of unknown function (DUF1620) IPR011678
PANTHER 1 985 985 PTHR21573:SF0 none none IPR026895
Pfam 47 262 216 PF13360 none PQQ-like domain none
SUPERFAMILY 33 271 239 SSF50998 none none IPR011047
SUPERFAMILY 489 580 92 SSF50998 none none IPR011047
Gene3D 55 267 213 G3DSA:2.140.10.10 none none IPR027295

3 Localization

Analysis Start End Length
TMHMM 952 974 22
SignalP_EUK 1 18 17
SignalP_GRAM_NEGATIVE 1 18 17

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 23   Secretory pathway 1 0.966 0.035 NON-PLANT 23