Protein : Qrob_P0256970.2 Q. robur
Protein Identifier  ? Qrob_P0256970.2 Organism . Name  Quercus robur
Protein Description  (M=9) K01166 - ribonuclease T2 [EC:3.1.27.1] Alias (in v1)  Qrob_P0066650.1
Code Enzyme  EC:3.1.27.1 Gene Prediction Quality  manual_v1
Protein length 

Sequence

Length: 228  
Kegg Orthology  K01166
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0033897 ribonuclease T2 activity Catalysis of the two-stage endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides with 2',3'-cyclic phosphate intermediates.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|eus:EUTSA_v10004863mg 29 224 + 196 Gaps:15 86.52 230 36.68 2e-29 hypothetical protein
blastp_kegg lcl|sita:101772473 6 224 + 219 Gaps:19 94.37 231 35.32 6e-28 ribonuclease 1-like
blastp_kegg lcl|crb:CARUB_v10017969mg 7 224 + 218 Gaps:20 93.91 230 35.19 1e-27 hypothetical protein
blastp_kegg lcl|brp:103853966 6 224 + 219 Gaps:22 93.89 229 34.88 2e-27 ribonuclease 1
blastp_kegg lcl|gmx:100778239 7 225 + 219 Gaps:22 95.13 226 33.49 1e-26 ribonuclease 3-like
blastp_kegg lcl|gmx:100306447 7 225 + 219 Gaps:20 95.13 226 34.42 1e-26 uncharacterized LOC100306447
blastp_kegg lcl|aly:ARALYDRAFT_346793 29 224 + 196 Gaps:15 86.52 230 35.18 2e-26 ribonuclease RNS1
blastp_kegg lcl|ath:AT2G02990 29 224 + 196 Gaps:15 86.52 230 34.67 4e-26 RNS1 ribonuclease 1
blastp_kegg lcl|tcc:TCM_011700 7 224 + 218 Gaps:21 94.71 227 33.95 7e-26 Ribonuclease 1
blastp_kegg lcl|cic:CICLE_v10032651mg 29 224 + 196 Gaps:14 86.96 230 35.00 8e-26 hypothetical protein
blastp_pdb 1dix_A 29 224 + 196 Gaps:12 96.15 208 33.50 6e-26 mol:protein length:208 EXTRACELLULAR RIBONUCLEASE LE
blastp_pdb 1iyb_B 25 224 + 200 Gaps:13 97.60 208 32.02 7e-26 mol:protein length:208 Ribonuclease
blastp_pdb 1iyb_A 25 224 + 200 Gaps:13 97.60 208 32.02 7e-26 mol:protein length:208 Ribonuclease
blastp_pdb 1vd3_A 25 224 + 200 Gaps:17 93.55 217 29.56 2e-21 mol:protein length:217 RNase NGR3
blastp_pdb 1vd1_A 25 224 + 200 Gaps:17 93.55 217 29.56 2e-21 mol:protein length:217 RNase NGR3
blastp_pdb 1vcz_A 25 224 + 200 Gaps:17 93.55 217 29.56 2e-21 mol:protein length:217 RNase NGR3
blastp_pdb 1ioo_B 29 211 + 183 Gaps:5 91.84 196 31.11 6e-18 mol:protein length:196 SF11-RNASE
blastp_pdb 1ioo_A 29 211 + 183 Gaps:5 91.84 196 31.11 6e-18 mol:protein length:196 SF11-RNASE
blastp_pdb 1sgl_A 29 210 + 182 Gaps:26 89.95 209 28.19 3e-16 mol:protein length:209 trichomaglin
blastp_pdb 1bol_A 57 224 + 168 Gaps:17 80.63 222 27.93 1e-15 mol:protein length:222 PROTEIN (RIBONUCLEASE RH)
blastp_uniprot_sprot sp|P42813|RNS1_ARATH 29 224 + 196 Gaps:15 86.52 230 34.67 1e-27 Ribonuclease 1 OS Arabidopsis thaliana GN RNS1 PE 1 SV 1
blastp_uniprot_sprot sp|P80022|RNLE_SOLLC 8 224 + 217 Gaps:13 95.65 230 32.27 2e-25 Extracellular ribonuclease LE OS Solanum lycopersicum PE 1 SV 2
blastp_uniprot_sprot sp|P42815|RNS3_ARATH 1 225 + 225 Gaps:20 99.55 222 28.96 9e-23 Ribonuclease 3 OS Arabidopsis thaliana GN RNS3 PE 2 SV 1
blastp_uniprot_sprot sp|P80196|RNLX_SOLLC 6 224 + 219 Gaps:24 90.72 237 31.16 2e-21 Intracellular ribonuclease LX OS Solanum lycopersicum GN RNALX PE 1 SV 2
blastp_uniprot_sprot sp|Q7M438|RNDI_DICDI 3 225 + 223 Gaps:22 99.10 223 30.32 5e-20 Ribonuclease DdI OS Dictyostelium discoideum GN ddiA PE 1 SV 3
blastp_uniprot_sprot sp|Q40875|RNS3_PETHY 23 200 + 178 Gaps:7 79.73 222 30.51 1e-18 Ribonuclease S-3 OS Petunia hybrida GN S3 PE 3 SV 1
blastp_uniprot_sprot sp|P42814|RNS2_ARATH 1 210 + 210 Gaps:35 84.56 259 29.68 2e-18 Ribonuclease 2 OS Arabidopsis thaliana GN RNS2 PE 2 SV 1
blastp_uniprot_sprot sp|Q01796|RNS2_SOLTU 29 201 + 173 Gaps:14 77.58 223 32.95 3e-18 Ribonuclease S-2 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q40381|RNS7_NICAL 29 211 + 183 Gaps:20 82.11 218 31.28 6e-18 Ribonuclease S-7 OS Nicotiana alata PE 1 SV 1
blastp_uniprot_sprot sp|Q7SID5|RNS11_NICAL 29 211 + 183 Gaps:5 91.84 196 31.11 2e-17 Ribonuclease S-F11 OS Nicotiana alata PE 1 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 14 17 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
ProSitePatterns 112 123 12 PS00531 none Ribonuclease T2 family histidine active site 2. IPR018188
Phobius 1 17 17 SIGNAL_PEPTIDE none Signal peptide region none
ProSitePatterns 58 65 8 PS00530 none Ribonuclease T2 family histidine active site 1. IPR018188
PANTHER 3 225 223 PTHR11240 none none IPR001568
Phobius 18 227 210 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 29 211 183 PF00445 none Ribonuclease T2 family IPR001568
Phobius 1 4 4 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SUPERFAMILY 28 223 196 SSF55895 none none IPR001568
Phobius 5 13 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Gene3D 6 223 218 G3DSA:3.90.730.10 none none IPR001568

3 Localization

Analysis Start End Length
SignalP_EUK 1 19 18
SignalP_GRAM_NEGATIVE 1 17 16
SignalP_GRAM_POSITIVE 1 17 16

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 19   Secretory pathway 1 0.968 0.051 NON-PLANT 19