Protein : Qrob_P0249020.2 Q. robur
Protein Identifier  ? Qrob_P0249020.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR18934//PTHR18934:SF86 - ATP-DEPENDENT RNA HELICASE // SUBFAMILY NOT NAMED Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1035  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0004386 helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100260829 3 1034 + 1032 Gaps:37 82.62 1231 72.96 0.0 probable ATP-dependent RNA helicase YTHDC2-like
blastp_kegg lcl|cit:102624626 3 1031 + 1029 Gaps:34 81.35 1233 72.98 0.0 probable ATP-dependent RNA helicase DHX36-like
blastp_kegg lcl|cic:CICLE_v10033885mg 3 994 + 992 Gaps:25 81.29 1197 73.28 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1194900 3 1033 + 1031 Gaps:30 82.59 1229 68.97 0.0 ATP-dependent RNA helicase putative
blastp_kegg lcl|pop:POPTR_0005s22810g 3 1033 + 1031 Gaps:65 80.86 1207 73.05 0.0 POPTRDRAFT_831577 NUCLEAR DEIH-BOXHELICASE family protein
blastp_kegg lcl|tcc:TCM_001934 3 1032 + 1030 Gaps:73 82.93 1207 70.93 0.0 ATP-dependent RNA helicase putative isoform 1
blastp_kegg lcl|pxb:103947403 3 1034 + 1032 Gaps:82 84.17 1276 65.55 0.0 ATP-dependent RNA helicase DHX36-like
blastp_kegg lcl|csv:101221870 3 1034 + 1032 Gaps:43 83.66 1230 67.64 0.0 probable ATP-dependent RNA helicase DHX36-like
blastp_kegg lcl|mdm:103443155 3 1034 + 1032 Gaps:83 84.18 1277 66.33 0.0 ATP-dependent RNA helicase DHX36
blastp_kegg lcl|pper:PRUPE_ppa000327mg 3 1024 + 1022 Gaps:82 82.37 1282 67.33 0.0 hypothetical protein
blastp_pdb 3kx2_A 3 806 + 804 Gaps:75 76.66 767 34.18 2e-37 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 3kx2_B 3 806 + 804 Gaps:75 76.66 767 34.18 2e-37 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 2xau_B 3 806 + 804 Gaps:75 76.07 773 34.18 2e-37 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 2xau_A 3 806 + 804 Gaps:75 76.07 773 34.18 2e-37 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 3llm_B 3 180 + 178 Gaps:42 61.28 235 56.25 2e-32 mol:protein length:235 ATP-dependent RNA helicase A
blastp_pdb 3llm_A 3 180 + 178 Gaps:42 61.28 235 56.25 2e-32 mol:protein length:235 ATP-dependent RNA helicase A
blastp_pdb 3i4u_A 545 753 + 209 Gaps:18 70.74 270 25.13 6e-09 mol:protein length:270 ATP-dependent RNA helicase DHX8
blastp_uniprot_sprot sp|Q9H6S0|YTDC2_HUMAN 3 913 + 911 Gaps:144 65.94 1430 36.27 7e-163 Probable ATP-dependent RNA helicase YTHDC2 OS Homo sapiens GN YTHDC2 PE 1 SV 2
blastp_uniprot_sprot sp|B2RR83|YTDC2_MOUSE 3 913 + 911 Gaps:148 65.26 1445 36.27 2e-162 Probable ATP-dependent RNA helicase YTHDC2 OS Mus musculus GN Ythdc2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6P158|DHX57_HUMAN 3 795 + 793 Gaps:153 52.96 1386 37.19 6e-116 Putative ATP-dependent RNA helicase DHX57 OS Homo sapiens GN DHX57 PE 1 SV 2
blastp_uniprot_sprot sp|Q8VHK9|DHX36_MOUSE 3 811 + 809 Gaps:65 63.44 1001 46.61 1e-111 Probable ATP-dependent RNA helicase DHX36 OS Mus musculus GN Dhx36 PE 1 SV 2
blastp_uniprot_sprot sp|Q9H2U1|DHX36_HUMAN 3 813 + 811 Gaps:63 63.29 1008 46.39 3e-111 Probable ATP-dependent RNA helicase DHX36 OS Homo sapiens GN DHX36 PE 1 SV 2
blastp_uniprot_sprot sp|Q6P5D3|DHX57_MOUSE 3 795 + 793 Gaps:154 52.95 1388 36.46 7e-111 Putative ATP-dependent RNA helicase DHX57 OS Mus musculus GN Dhx57 PE 2 SV 2
blastp_uniprot_sprot sp|Q5ZI74|DHX30_CHICK 3 800 + 798 Gaps:77 50.61 1231 41.57 8e-79 Putative ATP-dependent RNA helicase DHX30 OS Gallus gallus GN DHX30 PE 2 SV 1
blastp_uniprot_sprot sp|A3KMI0|DHX29_XENLA 3 800 + 798 Gaps:84 46.40 1362 41.61 1e-78 ATP-dependent RNA helicase DHX29 OS Xenopus laevis GN dhx29 PE 2 SV 1
blastp_uniprot_sprot sp|Q7Z478|DHX29_HUMAN 3 800 + 798 Gaps:88 46.17 1369 41.77 2e-78 ATP-dependent RNA helicase DHX29 OS Homo sapiens GN DHX29 PE 1 SV 2
blastp_uniprot_sprot sp|Q6PGC1|DHX29_MOUSE 19 800 + 782 Gaps:72 44.69 1365 41.48 9e-78 ATP-dependent RNA helicase Dhx29 OS Mus musculus GN Dhx29 PE 2 SV 1
rpsblast_cdd gnl|CDD|31829 3 759 + 757 Gaps:71 68.88 845 36.60 5e-71 COG1643 HrpA HrpA-like helicases [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|162630 3 662 + 660 Gaps:76 57.02 819 34.69 4e-39 TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length while its paralog HrpA (TIGR01967) also uncharacterized is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
rpsblast_cdd gnl|CDD|162629 3 754 + 752 Gaps:97 42.95 1283 37.02 4e-38 TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long while its paralog HrpB also uncharacterized is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

27 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 681 797 117 PF07717 none Oligonucleotide/oligosaccharide-binding (OB)-fold IPR011709
Gene3D 259 336 78 G3DSA:1.25.40.20 none none IPR020683
Phobius 153 1034 882 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 354 615 262 SSF52540 none none IPR027417
SMART 549 644 96 SM00847 none Helicase associated domain (HA2) Add an annotation IPR007502
Gene3D 356 502 147 G3DSA:3.40.50.300 none none IPR027417
PANTHER 3 83 81 PTHR18934:SF86 none none IPR031083
PANTHER 99 132 34 PTHR18934:SF86 none none IPR031083
PANTHER 345 796 452 PTHR18934:SF86 none none IPR031083
PANTHER 827 937 111 PTHR18934:SF86 none none IPR031083
PANTHER 153 194 42 PTHR18934 none none none
Pfam 396 485 90 PF00271 none Helicase conserved C-terminal domain IPR001650
ProSiteProfiles 352 526 175 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
SUPERFAMILY 5 193 189 SSF52540 none none IPR027417
Gene3D 3 165 163 G3DSA:3.40.50.300 none none IPR027417
Phobius 134 152 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 153 194 42 PTHR18934:SF86 none none IPR031083
SUPERFAMILY 261 321 61 SSF48403 none none IPR020683
PANTHER 3 83 81 PTHR18934 none none none
PANTHER 345 796 452 PTHR18934 none none none
PANTHER 827 937 111 PTHR18934 none none none
PANTHER 99 132 34 PTHR18934 none none none
Pfam 550 640 91 PF04408 none Helicase associated domain (HA2) IPR007502
Phobius 1 133 133 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 265 333 69 PS50297 none Ankyrin repeat region circular profile. IPR020683
ProSiteProfiles 1 181 181 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
SMART 380 486 107 SM00490 none helicase superfamily c-terminal domain IPR001650

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting