Protein : Qrob_P0249010.2 Q. robur
Protein Identifier  ? Qrob_P0249010.2 Organism . Name  Quercus robur
Score  95.1 Score Type  egn
Protein Description  (M=1) KOG0920//KOG0921//KOG0922//KOG0923//KOG0924//KOG0926 - ATP-dependent RNA helicase A [RNA processing and modification]. // Dosage compensation complex subunit MLE [Transcription]. // DEAH-box RNA helicase [RNA processing and modification]. // mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]. // mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]. // DEAH-box RNA helicase [RNA processing and modification Translation ribosomal structure and biogenesis]. Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 231  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0004386 helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10033885mg 22 228 + 207 none 17.29 1197 62.80 9e-76 hypothetical protein
blastp_kegg lcl|cit:102624626 22 228 + 207 none 16.79 1233 62.80 2e-75 probable ATP-dependent RNA helicase DHX36-like
blastp_kegg lcl|tcc:TCM_001934 19 228 + 210 none 17.40 1207 61.43 7e-75 ATP-dependent RNA helicase putative isoform 1
blastp_kegg lcl|sot:102602592 21 228 + 208 none 17.26 1205 59.62 2e-73 probable ATP-dependent RNA helicase DHX36-like
blastp_kegg lcl|sly:101247633 21 228 + 208 none 17.35 1199 59.13 4e-72 probable ATP-dependent RNA helicase YTHDC2-like
blastp_kegg lcl|pop:POPTR_0005s22810g 22 228 + 207 none 17.15 1207 59.90 5e-70 POPTRDRAFT_831577 NUCLEAR DEIH-BOXHELICASE family protein
blastp_kegg lcl|vvi:100260829 1 228 + 228 Gaps:4 18.20 1231 60.27 3e-69 probable ATP-dependent RNA helicase YTHDC2-like
blastp_kegg lcl|rcu:RCOM_1194900 21 228 + 208 none 16.92 1229 57.21 2e-67 ATP-dependent RNA helicase putative
blastp_kegg lcl|csv:101226215 30 228 + 199 Gaps:11 14.62 1286 63.30 3e-64 probable ATP-dependent RNA helicase DHX36-like
blastp_kegg lcl|csv:101221870 30 228 + 199 Gaps:11 15.28 1230 63.30 5e-64 probable ATP-dependent RNA helicase DHX36-like
blastp_uniprot_sprot sp|Q9H6S0|YTDC2_HUMAN 20 230 + 211 Gaps:12 13.92 1430 27.64 8e-12 Probable ATP-dependent RNA helicase YTHDC2 OS Homo sapiens GN YTHDC2 PE 1 SV 2
blastp_uniprot_sprot sp|B2RR83|YTDC2_MOUSE 20 230 + 211 Gaps:12 13.77 1445 27.14 1e-11 Probable ATP-dependent RNA helicase YTHDC2 OS Mus musculus GN Ythdc2 PE 1 SV 1
blastp_uniprot_sprot sp|Q22307|DHX9_CAEEL 139 230 + 92 Gaps:1 6.99 1301 35.16 5e-08 Probable ATP-dependent RNA helicase A OS Caenorhabditis elegans GN rha-1 PE 2 SV 3
blastp_uniprot_sprot sp|Q99PU8|DHX30_MOUSE 151 219 + 69 Gaps:1 5.59 1217 42.65 6e-07 Putative ATP-dependent RNA helicase DHX30 OS Mus musculus GN Dhx30 PE 2 SV 1
blastp_uniprot_sprot sp|Q5BJS0|DHX30_RAT 151 219 + 69 Gaps:1 5.70 1194 42.65 7e-07 Putative ATP-dependent RNA helicase DHX30 OS Rattus norvegicus GN Dhx30 PE 1 SV 1
blastp_uniprot_sprot sp|Q7Z478|DHX29_HUMAN 155 230 + 76 none 5.55 1369 34.21 8e-07 ATP-dependent RNA helicase DHX29 OS Homo sapiens GN DHX29 PE 1 SV 2
blastp_uniprot_sprot sp|B3M383|SPNE_DROAN 186 224 + 39 none 2.73 1429 58.97 1e-06 Probable ATP-dependent RNA helicase spindle-E OS Drosophila ananassae GN spn-E PE 3 SV 1
blastp_uniprot_sprot sp|P24785|MLE_DROME 177 224 + 48 none 3.71 1293 50.00 2e-06 Dosage compensation regulator OS Drosophila melanogaster GN mle PE 2 SV 2
blastp_uniprot_sprot sp|O45244|DHX16_CAEEL 179 219 + 41 none 4.07 1008 48.78 3e-06 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS Caenorhabditis elegans GN mog-4 PE 1 SV 2
blastp_uniprot_sprot sp|O70133|DHX9_MOUSE 166 230 + 65 none 4.71 1380 41.54 3e-06 ATP-dependent RNA helicase A OS Mus musculus GN Dhx9 PE 1 SV 2
rpsblast_cdd gnl|CDD|100077 28 85 + 58 none 98.31 59 50.00 4e-15 cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner..
rpsblast_cdd gnl|CDD|31829 138 219 + 82 none 9.70 845 36.59 5e-11 COG1643 HrpA HrpA-like helicases [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|162629 157 219 + 63 Gaps:2 4.91 1283 34.92 1e-08 TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long while its paralog HrpB also uncharacterized is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
rpsblast_cdd gnl|CDD|182986 157 219 + 63 Gaps:2 4.87 1294 39.68 2e-07 PRK11131 PRK11131 ATP-dependent RNA helicase HrpA Provisional.
rpsblast_kog gnl|CDD|36138 55 219 + 165 Gaps:24 15.48 924 32.17 5e-13 KOG0920 KOG0920 KOG0920 ATP-dependent RNA helicase A [RNA processing and modification].
rpsblast_kog gnl|CDD|36140 137 228 + 92 Gaps:1 13.50 674 27.47 5e-10 KOG0922 KOG0922 KOG0922 DEAH-box RNA helicase [RNA processing and modification].
rpsblast_kog gnl|CDD|36141 171 219 + 49 none 5.43 902 36.73 2e-08 KOG0923 KOG0923 KOG0923 mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification].
rpsblast_kog gnl|CDD|36139 142 230 + 89 Gaps:1 6.86 1282 35.23 2e-08 KOG0921 KOG0921 KOG0921 Dosage compensation complex subunit MLE [Transcription].
rpsblast_kog gnl|CDD|36144 119 219 + 101 Gaps:12 9.47 1172 27.93 6e-08 KOG0926 KOG0926 KOG0926 DEAH-box RNA helicase [RNA processing and modification Translation ribosomal structure and biogenesis].
rpsblast_kog gnl|CDD|36142 125 220 + 96 Gaps:6 9.79 1042 28.43 2e-07 KOG0924 KOG0924 KOG0924 mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 185 220 36 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 24 87 64 PS51061 none R3H domain profile. IPR001374
Pfam 145 222 78 PF00437 none Type II/IV secretion system protein IPR001482
Pfam 27 85 59 PF01424 none R3H domain IPR001374
Gene3D 26 88 63 G3DSA:3.30.1370.50 none none IPR001374
PANTHER 17 219 203 PTHR18934:SF86 none none IPR031083
SUPERFAMILY 27 85 59 SSF82708 none none IPR001374
SUPERFAMILY 185 220 36 SSF52540 none none IPR027417
PANTHER 17 219 203 PTHR18934 none none none
SMART 10 86 77 SM00393 none Putative single-stranded nucleic acids-binding domain IPR001374

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting