Protein : Qrob_P0248690.2 Q. robur
Protein Identifier  ? Qrob_P0248690.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG1052//KOG1053//KOG1054//KOG1056 - Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits G-protein coupled receptor superfamily [Inorganic ion transport and metabolism Signal transduction mechanisms]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 883  
Kegg Orthology  K05387
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004970 ionotropic glutamate receptor activity Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103455753 5 859 + 855 Gaps:146 92.72 920 54.28 0.0 glutamate receptor 2.8-like
blastp_kegg lcl|pop:POPTR_0017s09420g 5 760 + 756 Gaps:135 92.74 840 58.15 0.0 hypothetical protein
blastp_kegg lcl|pmum:103320898 8 855 + 848 Gaps:136 91.65 934 54.21 0.0 glutamate receptor 2.8-like
blastp_kegg lcl|rcu:RCOM_0919660 5 862 + 858 Gaps:145 88.05 971 53.80 0.0 glutamate receptor 2 plant putative
blastp_kegg lcl|pxb:103949671 5 849 + 845 Gaps:146 87.09 968 55.16 0.0 glutamate receptor 2.8-like
blastp_kegg lcl|pxb:103953098 4 846 + 843 Gaps:146 90.04 934 54.22 0.0 glutamate receptor 2.8-like
blastp_kegg lcl|tcc:TCM_036854 8 821 + 814 Gaps:131 84.68 979 54.64 0.0 Glutamate receptor putative
blastp_kegg lcl|pmum:103320682 5 846 + 842 Gaps:135 92.62 921 55.10 0.0 glutamate receptor 2.8-like
blastp_kegg lcl|mdm:103449079 5 849 + 845 Gaps:149 87.14 964 54.17 0.0 glutamate receptor 2.7-like
blastp_kegg lcl|pper:PRUPE_ppa016908mg 8 843 + 836 Gaps:141 89.73 935 54.35 0.0 hypothetical protein
blastp_pdb 3kg2_D 356 614 + 259 Gaps:52 29.53 823 25.93 1e-08 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_C 356 614 + 259 Gaps:52 29.53 823 25.93 1e-08 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_B 356 614 + 259 Gaps:52 29.53 823 25.93 1e-08 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_A 356 614 + 259 Gaps:52 29.53 823 25.93 1e-08 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3lmk_B 13 291 + 279 Gaps:30 61.99 492 20.98 1e-06 mol:protein length:492 Metabotropic glutamate receptor 5
blastp_pdb 3lmk_A 13 291 + 279 Gaps:30 61.99 492 20.98 1e-06 mol:protein length:492 Metabotropic glutamate receptor 5
blastp_pdb 3oen_A 392 539 + 148 Gaps:11 48.60 286 25.18 8e-06 mol:protein length:286 Glutamate [NMDA] receptor subunit epsilon-4
blastp_pdb 3oem_A 392 539 + 148 Gaps:11 48.60 286 25.18 8e-06 mol:protein length:286 Glutamate [NMDA] receptor subunit epsilon-4
blastp_pdb 3oel_A 392 539 + 148 Gaps:11 48.60 286 25.18 8e-06 mol:protein length:286 Glutamate [NMDA] receptor subunit epsilon-4
blastp_pdb 3oek_A 392 539 + 148 Gaps:11 48.60 286 25.18 8e-06 mol:protein length:286 Glutamate [NMDA] receptor subunit epsilon-4
blastp_uniprot_sprot sp|Q9C5V5|GLR28_ARATH 5 795 + 791 Gaps:142 83.32 947 48.67 0.0 Glutamate receptor 2.8 OS Arabidopsis thaliana GN GLR2.8 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFN5|GLR25_ARATH 7 760 + 754 Gaps:140 83.01 918 44.62 0.0 Glutamate receptor 2.5 OS Arabidopsis thaliana GN GLR2.5 PE 2 SV 2
blastp_uniprot_sprot sp|O04660|GLR21_ARATH 5 755 + 751 Gaps:148 84.24 901 44.01 0.0 Glutamate receptor 2.1 OS Arabidopsis thaliana GN GLR2.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SHV2|GLR23_ARATH 5 756 + 752 Gaps:146 85.36 895 42.54 0.0 Glutamate receptor 2.3 OS Arabidopsis thaliana GN GLR2.3 PE 2 SV 1
blastp_uniprot_sprot sp|O81078|GLR29_ARATH 5 854 + 850 Gaps:103 83.19 940 48.21 5e-180 Glutamate receptor 2.9 OS Arabidopsis thaliana GN GLR2.9 PE 2 SV 1
blastp_uniprot_sprot sp|O81776|GLR24_ARATH 5 709 + 705 Gaps:151 77.90 896 43.55 1e-178 Glutamate receptor 2.4 OS Arabidopsis thaliana GN GLR2.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGN0|GLR27_ARATH 5 800 + 796 Gaps:89 83.30 952 48.30 9e-141 Glutamate receptor 2.7 OS Arabidopsis thaliana GN GLR2.7 PE 2 SV 3
blastp_uniprot_sprot sp|Q9C8E7|GLR33_ARATH 12 809 + 798 Gaps:159 88.00 933 31.91 2e-111 Glutamate receptor 3.3 OS Arabidopsis thaliana GN GLR3.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SHV1|GLR22_ARATH 5 709 + 705 Gaps:78 77.50 920 45.30 8e-110 Glutamate receptor 2.2 OS Arabidopsis thaliana GN GLR2.2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXJ4|GLR34_ARATH 4 751 + 748 Gaps:156 79.25 959 30.79 5e-107 Glutamate receptor 3.4 OS Arabidopsis thaliana GN GLR3.4 PE 2 SV 2

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 408 562 155 SSF53850 none none none
SUPERFAMILY 613 711 99 SSF53850 none none none
Pfam 558 606 49 PF00060 none Ligand-gated ion channel IPR001320
PANTHER 411 775 365 PTHR18966 none none none
Phobius 732 756 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 5 279 275 PTHR18966 none none none
SUPERFAMILY 411 423 13 SSF53822 none none IPR028082
SUPERFAMILY 2 291 290 SSF53822 none none IPR028082
SUPERFAMILY 348 382 35 SSF53822 none none IPR028082
Phobius 1 555 555 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 336 387 52 PTHR18966:SF6 none none none
Gene3D 216 254 39 G3DSA:3.40.50.2300 none none none
Gene3D 3 66 64 G3DSA:3.40.50.2300 none none none
Phobius 579 731 153 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 556 578 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SMART 430 711 282 SM00079 none Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IPR001320
Phobius 757 882 126 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 455 659 205 PF00497 none Bacterial extracellular solute-binding proteins, family 3 none
PANTHER 5 279 275 PTHR18966:SF6 none none none
PANTHER 411 775 365 PTHR18966:SF6 none none none
Gene3D 67 215 149 G3DSA:3.40.50.2300 none none none
Gene3D 427 587 161 G3DSA:3.40.190.10 none none none
PANTHER 336 387 52 PTHR18966 none none none
Pfam 5 297 293 PF01094 none Receptor family ligand binding region IPR001828

2 Localization

Analysis Start End Length
TMHMM 732 754 22
TMHMM 556 578 22

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting