Protein : Qrob_P0248510.2 Q. robur
Protein Identifier  ? Qrob_P0248510.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K14560 - U3 small nucleolar ribonucleoprotein protein IMP3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 186  
Kegg Orthology  K14560
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0019843 rRNA binding Interacting selectively and non-covalently with ribosomal RNA.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103329588 1 185 + 185 Gaps:3 100.00 182 78.57 2e-103 U3 small nucleolar ribonucleoprotein protein IMP3
blastp_kegg lcl|pper:PRUPE_ppa012139mg 1 185 + 185 Gaps:3 100.00 182 78.57 2e-103 hypothetical protein
blastp_kegg lcl|mdm:103425902 1 185 + 185 Gaps:3 100.00 182 78.02 5e-103 U3 small nucleolar ribonucleoprotein protein IMP3-like
blastp_kegg lcl|mdm:103404660 1 185 + 185 Gaps:3 100.00 182 78.02 5e-103 U3 small nucleolar ribonucleoprotein protein IMP3-like
blastp_kegg lcl|pxb:103966793 1 185 + 185 Gaps:3 100.00 182 78.02 2e-102 U3 small nucleolar ribonucleoprotein protein IMP3
blastp_kegg lcl|vvi:100261745 1 185 + 185 Gaps:3 100.00 182 78.02 3e-102 U3 small nucleolar ribonucleoprotein protein IMP3-like
blastp_kegg lcl|pvu:PHAVU_007G072900g 1 184 + 184 Gaps:3 99.45 182 79.01 4e-102 hypothetical protein
blastp_kegg lcl|gmx:100798516 1 184 + 184 Gaps:3 99.45 182 77.90 1e-101 U3 small nucleolar ribonucleoprotein protein IMP3-like
blastp_kegg lcl|gmx:100782389 1 184 + 184 Gaps:3 99.45 182 77.90 1e-101 U3 small nucleolar ribonucleoprotein protein IMP3-like
blastp_kegg lcl|fve:101309368 1 184 + 184 Gaps:3 99.45 182 77.90 2e-101 U3 small nucleolar ribonucleoprotein protein IMP3-like
blastp_pdb 2cqj_A 110 168 + 59 none 83.10 71 67.80 4e-26 mol:protein length:71 U3 small nucleolar ribonucleoprotein protein
blastp_pdb 3iz6_C 60 173 + 114 Gaps:10 61.54 195 30.00 6e-08 mol:protein length:195 40S ribosomal protein S9 (S4p)
blastp_pdb 3jyv_D 60 165 + 106 Gaps:2 65.82 158 28.85 6e-07 mol:protein length:158 40S ribosomal protein S9(A)
blastp_pdb 1s1h_D 53 165 + 113 Gaps:2 62.01 179 27.03 8e-07 mol:protein length:179 40S ribosomal protein S9-A
blastp_pdb 3u5g_J 53 165 + 113 Gaps:2 56.35 197 27.03 1e-06 mol:protein length:197 40S ribosomal protein S9-A
blastp_pdb 3u5c_J 53 165 + 113 Gaps:2 56.35 197 27.03 1e-06 mol:protein length:197 40S ribosomal protein S9-A
blastp_pdb 3o30_E 53 165 + 113 Gaps:2 56.35 197 27.03 1e-06 mol:protein length:197 40S ribosomal protein S9-A
blastp_pdb 3o2z_E 53 165 + 113 Gaps:2 56.35 197 27.03 1e-06 mol:protein length:197 40S ribosomal protein S9-A
blastp_pdb 3izb_C 53 165 + 113 Gaps:2 56.35 197 27.03 1e-06 mol:protein length:197 40S ribosomal protein rpS9 (S4p)
blastp_pdb 2xzn_D 54 167 + 114 Gaps:2 61.88 181 25.00 3e-06 mol:protein length:181 RIBOSOMAL PROTEIN S4 CONTAINING PROTEIN
blastp_uniprot_sprot sp|Q3T0M3|IMP3_BOVIN 1 182 + 182 Gaps:4 97.83 184 52.22 2e-62 U3 small nucleolar ribonucleoprotein protein IMP3 OS Bos taurus GN IMP3 PE 2 SV 1
blastp_uniprot_sprot sp|Q921Y2|IMP3_MOUSE 1 182 + 182 Gaps:4 97.83 184 51.11 5e-62 U3 small nucleolar ribonucleoprotein protein IMP3 OS Mus musculus GN Imp3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NV31|IMP3_HUMAN 1 182 + 182 Gaps:4 97.83 184 52.22 7e-62 U3 small nucleolar ribonucleoprotein protein IMP3 OS Homo sapiens GN IMP3 PE 1 SV 1
blastp_uniprot_sprot sp|P32899|IMP3_YEAST 1 182 + 182 Gaps:2 98.36 183 50.56 3e-60 U3 small nucleolar ribonucleoprotein protein IMP3 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN IMP3 PE 1 SV 1
blastp_uniprot_sprot sp|O13835|IMP3_SCHPO 1 184 + 184 Gaps:3 100.00 183 48.63 1e-59 U3 small nucleolar ribonucleoprotein protein imp3 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN imp3 PE 3 SV 1
blastp_uniprot_sprot sp|Q01688|YS4L_PNECA 1 169 + 169 Gaps:3 99.41 169 50.00 2e-49 Putative 37S ribosomal protein S4-like (Fragment) OS Pneumocystis carinii GN RBP PE 3 SV 1
blastp_uniprot_sprot sp|O01513|YS4L_CAEEL 1 184 + 184 Gaps:3 98.91 183 39.78 3e-45 Putative 40S ribosomal protein S4-like OS Caenorhabditis elegans GN C48B6.2 PE 3 SV 1
blastp_uniprot_sprot sp|A1RWT8|RS4_THEPD 20 172 + 153 Gaps:8 86.63 172 28.86 2e-12 30S ribosomal protein S4 OS Thermofilum pendens (strain Hrk 5) GN rps4 PE 3 SV 1
blastp_uniprot_sprot sp|A5UN53|RS4_METS3 20 175 + 156 Gaps:5 84.83 178 26.49 5e-11 30S ribosomal protein S4 OS Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN rps4 PE 3 SV 1
blastp_uniprot_sprot sp|Q6KZP7|RS4_PICTO 62 165 + 104 Gaps:3 55.19 183 33.66 5e-10 30S ribosomal protein S4 OS Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN rps4 PE 3 SV 1

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 110 175 66 SM00363 none S4 RNA-binding domain IPR002942
ProSiteProfiles 110 176 67 PS50889 none S4 RNA-binding domain profile. IPR002942
Pfam 4 92 89 PF00163 none Ribosomal protein S4/S9 N-terminal domain IPR001912
Coils 164 185 22 Coil none none none
PANTHER 2 184 183 PTHR11831 none none IPR022801
PANTHER 2 184 183 PTHR11831:SF1 none none none
Pfam 110 156 47 PF01479 none S4 domain IPR002942
Gene3D 110 174 65 G3DSA:3.10.290.10 none none IPR002942
SUPERFAMILY 26 176 151 SSF55174 none none none

0 Localization

0 Qtllist

0 Targeting