Protein : Qrob_P0247810.2 Q. robur
Protein Identifier  ? Qrob_P0247810.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR12777 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 104  
Kegg Orthology  K11096
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008380 RNA splicing The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
GO:0030532 small nuclear ribonucleoprotein complex A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa013707mg 1 103 + 103 none 96.26 107 98.06 1e-66 hypothetical protein
blastp_kegg lcl|pmum:103334149 1 103 + 103 none 96.26 107 97.09 2e-66 probable small nuclear ribonucleoprotein Sm D2
blastp_kegg lcl|rcu:RCOM_1148620 1 103 + 103 none 100.00 103 98.06 3e-66 small nuclear ribonucleoprotein sm d2 putative
blastp_kegg lcl|cmo:103493191 1 103 + 103 none 96.26 107 97.09 6e-66 small nuclear ribonucleoprotein Sm D2-like
blastp_kegg lcl|csv:101206064 1 103 + 103 none 96.26 107 97.09 6e-66 probable small nuclear ribonucleoprotein Sm D2-like
blastp_kegg lcl|pmum:103340048 1 103 + 103 none 96.26 107 97.09 9e-66 small nuclear ribonucleoprotein Sm D2-like
blastp_kegg lcl|pxb:103963179 1 103 + 103 none 96.26 107 96.12 3e-65 probable small nuclear ribonucleoprotein Sm D2
blastp_kegg lcl|mdm:103401788 1 103 + 103 none 96.26 107 96.12 3e-65 probable small nuclear ribonucleoprotein Sm D2
blastp_kegg lcl|vvi:100242311 1 103 + 103 none 96.26 107 96.12 3e-65 probable small nuclear ribonucleoprotein Sm D2-like
blastp_kegg lcl|cit:102610531 1 103 + 103 none 95.37 108 97.09 4e-65 probable small nuclear ribonucleoprotein Sm D2-like
blastp_pdb 3s6n_B 13 102 + 90 none 76.27 118 90.00 3e-44 mol:protein length:118 Small nuclear ribonucleoprotein Sm D2
blastp_pdb 3pgw_V 13 102 + 90 none 76.27 118 90.00 3e-44 mol:protein length:118 Sm-D2
blastp_pdb 3pgw_Y 13 102 + 90 none 76.27 118 90.00 3e-44 mol:protein length:118 Sm-D2
blastp_pdb 3cw1_R 13 102 + 90 none 76.27 118 90.00 3e-44 mol:protein length:118 Small nuclear ribonucleoprotein Sm D2
blastp_pdb 3cw1_Q 13 102 + 90 none 76.27 118 90.00 3e-44 mol:protein length:118 Small nuclear ribonucleoprotein Sm D2
blastp_pdb 3cw1_P 13 102 + 90 none 76.27 118 90.00 3e-44 mol:protein length:118 Small nuclear ribonucleoprotein Sm D2
blastp_pdb 3cw1_C 13 102 + 90 none 76.27 118 90.00 3e-44 mol:protein length:118 Small nuclear ribonucleoprotein Sm D2
blastp_pdb 2y9d_Q 13 102 + 90 none 76.27 118 90.00 3e-44 mol:protein length:118 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2
blastp_pdb 2y9d_J 13 102 + 90 none 76.27 118 90.00 3e-44 mol:protein length:118 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2
blastp_pdb 2y9d_C 13 102 + 90 none 76.27 118 90.00 3e-44 mol:protein length:118 SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2
blastp_uniprot_sprot sp|Q9VI10|SMD2_DROME 13 102 + 90 none 75.63 119 90.00 3e-45 Probable small nuclear ribonucleoprotein Sm D2 OS Drosophila melanogaster GN SmD2 PE 1 SV 1
blastp_uniprot_sprot sp|Q18786|SMD2_CAEEL 3 102 + 100 none 84.75 118 81.00 6e-45 Probable small nuclear ribonucleoprotein Sm D2 OS Caenorhabditis elegans GN snr-4 PE 1 SV 1
blastp_uniprot_sprot sp|P62317|SMD2_MOUSE 13 102 + 90 none 76.27 118 90.00 1e-43 Small nuclear ribonucleoprotein Sm D2 OS Mus musculus GN Snrpd2 PE 2 SV 1
blastp_uniprot_sprot sp|P62316|SMD2_HUMAN 13 102 + 90 none 76.27 118 90.00 1e-43 Small nuclear ribonucleoprotein Sm D2 OS Homo sapiens GN SNRPD2 PE 1 SV 1
blastp_uniprot_sprot sp|Q3SZF8|SMD2_BOVIN 13 102 + 90 none 76.27 118 90.00 1e-43 Small nuclear ribonucleoprotein Sm D2 OS Bos taurus GN SNRPD2 PE 3 SV 1
blastp_uniprot_sprot sp|Q54NC5|SMD2_DICDI 1 102 + 102 Gaps:1 90.18 112 77.23 1e-43 Probable small nuclear ribonucleoprotein Sm D2 OS Dictyostelium discoideum GN snrpd2 PE 3 SV 1
blastp_uniprot_sprot sp|O14036|SMD2_SCHPO 2 102 + 101 Gaps:1 86.96 115 68.00 2e-42 Small nuclear ribonucleoprotein Sm D2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN smd2 PE 1 SV 1
blastp_uniprot_sprot sp|Q06217|SMD2_YEAST 16 102 + 87 Gaps:7 72.73 110 60.00 3e-27 Small nuclear ribonucleoprotein Sm D2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SMD2 PE 1 SV 2
blastp_uniprot_sprot sp|P62311|LSM3_MOUSE 1 98 + 98 Gaps:3 93.14 102 30.53 8e-09 U6 snRNA-associated Sm-like protein LSm3 OS Mus musculus GN Lsm3 PE 3 SV 2
blastp_uniprot_sprot sp|P62310|LSM3_HUMAN 1 98 + 98 Gaps:3 93.14 102 30.53 8e-09 U6 snRNA-associated Sm-like protein LSm3 OS Homo sapiens GN LSM3 PE 1 SV 2

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 21 100 80 SM00651 none snRNP Sm proteins IPR006649
SUPERFAMILY 16 101 86 SSF50182 none none IPR010920
PANTHER 2 103 102 PTHR12777 none none IPR027248
Pfam 25 98 74 PF01423 none LSM domain IPR001163
Gene3D 15 103 89 G3DSA:2.30.30.100 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting