Protein : Qrob_P0241170.2 Q. robur
Protein Identifier  ? Qrob_P0241170.2 Organism . Name  Quercus robur
Score  90.1 Score Type  egn
Protein Description  (M=2) PTHR10774:SF51 - C2 CALCIUM/LIPID-BINDING ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE-RELATED (PTHR10774:SF51) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 336  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0006950 response to stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103441551 1 333 + 333 none 62.13 536 89.79 0.0 synaptotagmin-5
blastp_kegg lcl|pxb:103967724 1 333 + 333 none 60.88 547 89.19 0.0 synaptotagmin-5
blastp_kegg lcl|pper:PRUPE_ppa006397mg 1 333 + 333 none 80.63 413 88.29 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10019763mg 1 333 + 333 none 83.67 398 88.89 0.0 hypothetical protein
blastp_kegg lcl|cit:102611044 1 333 + 333 none 65.04 512 88.89 0.0 synaptotagmin-5-like
blastp_kegg lcl|vvi:100265985 1 333 + 333 none 64.91 513 88.59 0.0 tricalbin-1-like
blastp_kegg lcl|pmum:103331928 1 333 + 333 none 62.13 536 88.29 0.0 synaptotagmin-5
blastp_kegg lcl|fve:101308214 1 333 + 333 Gaps:1 64.22 517 87.35 0.0 synaptotagmin-5-like
blastp_kegg lcl|tcc:TCM_005473 1 333 + 333 none 65.04 512 87.39 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein isoform 1
blastp_kegg lcl|rcu:RCOM_1612600 1 333 + 333 none 64.66 515 85.59 0.0 calcium lipid binding protein putative
blastp_pdb 3hn8_C 243 333 + 91 Gaps:11 34.46 296 36.27 6e-07 mol:protein length:296 Synaptotagmin-3
blastp_pdb 3hn8_B 243 333 + 91 Gaps:11 34.46 296 36.27 6e-07 mol:protein length:296 Synaptotagmin-3
blastp_pdb 3hn8_A 243 333 + 91 Gaps:11 34.46 296 36.27 6e-07 mol:protein length:296 Synaptotagmin-3
blastp_pdb 1dqv_A 243 333 + 91 Gaps:11 34.46 296 36.27 6e-07 mol:protein length:296 SYNAPTOTAGMIN III
blastp_pdb 2chd_A 253 333 + 81 Gaps:7 61.97 142 32.95 2e-06 mol:protein length:142 RABPHILIN-3A
blastp_pdb 2k3h_A 253 333 + 81 Gaps:7 62.86 140 32.95 3e-06 mol:protein length:140 Rabphilin-3A
blastp_pdb 3kwu_A 261 316 + 56 Gaps:1 37.16 148 43.64 4e-06 mol:protein length:148 Munc13-1
blastp_pdb 3kwt_A 261 316 + 56 Gaps:1 37.16 148 43.64 4e-06 mol:protein length:148 Munc13-1
blastp_uniprot_sprot sp|Q8L706|SYT5_ARATH 1 335 + 335 Gaps:9 72.50 560 42.61 8e-86 Synaptotagmin-5 OS Arabidopsis thaliana GN SYT5 PE 2 SV 1
blastp_uniprot_sprot sp|A0JJX5|SYT4_ARATH 1 335 + 335 Gaps:11 71.88 569 43.28 2e-85 Synaptotagmin-4 OS Arabidopsis thaliana GN SYT4 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XA06|SYT3_ARATH 61 333 + 273 Gaps:12 50.19 540 37.64 3e-49 Synaptotagmin-3 OS Arabidopsis thaliana GN SYT3 PE 2 SV 1
blastp_uniprot_sprot sp|B6ETT4|SYT2_ARATH 1 330 + 330 Gaps:18 61.08 537 33.84 1e-47 Synaptotagmin-2 OS Arabidopsis thaliana GN SYT2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SKR2|SYT1_ARATH 1 332 + 332 Gaps:14 61.00 541 30.00 7e-42 Synaptotagmin-1 OS Arabidopsis thaliana GN SYT1 PE 1 SV 2
blastp_uniprot_sprot sp|Q3U7R1|ESYT1_MOUSE 5 332 + 328 Gaps:23 30.13 1092 29.18 8e-32 Extended synaptotagmin-1 OS Mus musculus GN Esyt1 PE 2 SV 2
blastp_uniprot_sprot sp|Q5M7N9|ESYT3_XENTR 11 332 + 322 Gaps:29 35.88 889 29.47 1e-31 Extended synaptotagmin-3 OS Xenopus tropicalis GN esyt3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9Z1X1|ESYT1_RAT 5 332 + 328 Gaps:23 30.24 1088 29.18 7e-31 Extended synaptotagmin-1 OS Rattus norvegicus GN Esyt1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5FWL4|EST2A_XENLA 53 333 + 281 Gaps:21 32.34 872 30.50 2e-30 Extended synaptotagmin-2-A OS Xenopus laevis GN esyt2-a PE 2 SV 1
blastp_uniprot_sprot sp|Q9BSJ8|ESYT1_HUMAN 6 332 + 327 Gaps:27 29.71 1104 29.27 3e-30 Extended synaptotagmin-1 OS Homo sapiens GN ESYT1 PE 1 SV 1
rpsblast_cdd gnl|CDD|34643 67 334 + 268 Gaps:35 30.32 1227 29.30 9e-30 COG5038 COG5038 Ca2+-dependent lipid-binding protein contains C2 domain [General function prediction only].
rpsblast_cdd gnl|CDD|175973 268 332 + 65 none 63.73 102 49.23 1e-17 cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids inositol polyphosphates and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain such as protein kinase C or membrane trafficking proteins which contain at least two C2 domains such as synaptotagmin 1. However there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues primarily aspartates that serve as ligands for calcium ions.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 332 332 PTHR10774 none none none
SUPERFAMILY 262 332 71 SSF49562 none none IPR000008
Gene3D 237 332 96 G3DSA:2.60.40.150 none none IPR000008
ProSiteProfiles 251 335 85 PS50004 none C2 domain profile. IPR000008
Pfam 268 333 66 PF00168 none C2 domain IPR000008
PANTHER 1 332 332 PTHR10774:SF51 none none IPR031069
Phobius 26 335 310 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 6 25 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

1 Localization

Analysis Start End Length
TMHMM 2 21 19

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 18   Secretory pathway 2 0.901 0.135 NON-PLANT 18