Protein : Qrob_P0240630.2 Q. robur
Protein Identifier  ? Qrob_P0240630.2 Organism . Name  Quercus robur
Score  38.1 Score Type  egn
Protein Description  (M=1) K18813 - cyclin D7, plant Gene Prediction Quality  validated
Protein length 

Sequence

Length: 339  
Kegg Orthology  K18813
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0051726 regulation of cell cycle Any process that modulates the rate or extent of progression through the cell cycle.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0006s08860g 1 337 + 337 Gaps:8 96.35 356 59.48 6e-135 POPTRDRAFT_762391 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0451720 1 337 + 337 Gaps:12 98.28 349 57.14 6e-131 cyclin d putative
blastp_kegg lcl|pper:PRUPE_ppa025915mg 1 338 + 338 Gaps:9 99.42 343 60.41 5e-129 hypothetical protein
blastp_kegg lcl|tcc:TCM_021894 1 338 + 338 Gaps:5 90.40 375 56.34 6e-127 D7-type cyclin putative
blastp_kegg lcl|vvi:100263149 1 336 + 336 Gaps:6 99.41 338 57.44 6e-121 putative cyclin-D7-1-like
blastp_kegg lcl|cit:102614843 2 334 + 333 Gaps:20 98.02 354 58.21 1e-116 putative cyclin-D7-1-like
blastp_kegg lcl|cic:CICLE_v10012085mg 2 334 + 333 Gaps:20 98.86 351 57.93 2e-116 hypothetical protein
blastp_kegg lcl|mdm:103450287 1 281 + 281 Gaps:8 93.98 299 59.79 3e-109 putative cyclin-D7-1
blastp_kegg lcl|pxb:103941729 1 298 + 298 Gaps:8 98.37 307 56.95 6e-104 putative cyclin-D7-1
blastp_kegg lcl|pmum:103340811 1 216 + 216 Gaps:3 95.63 229 66.21 9e-93 putative cyclin-D7-1
blastp_pdb 1w98_B 43 232 + 190 Gaps:14 67.84 283 27.60 9e-12 mol:protein length:283 G1/S-SPECIFIC CYCLIN E1
blastp_pdb 3g33_D 43 271 + 229 Gaps:8 73.53 306 23.56 5e-08 mol:protein length:306 CCND3 protein
blastp_pdb 3g33_B 43 271 + 229 Gaps:8 73.53 306 23.56 5e-08 mol:protein length:306 CCND3 protein
blastp_uniprot_sprot sp|Q9LZM0|CCD71_ARATH 1 265 + 265 Gaps:12 75.95 341 41.31 7e-54 Putative cyclin-D7-1 OS Arabidopsis thaliana GN CYCD7-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8H339|CCD12_ORYSJ 51 286 + 236 Gaps:13 64.12 354 33.92 2e-30 Cyclin-D1-2 OS Oryza sativa subsp. japonica GN CYCD1-2 PE 3 SV 2
blastp_uniprot_sprot sp|P42751|CCD11_ARATH 45 271 + 227 Gaps:15 67.26 339 32.02 3e-30 Cyclin-D1-1 OS Arabidopsis thaliana GN CYCD1-1 PE 1 SV 3
blastp_uniprot_sprot sp|Q8LHA8|CCD22_ORYSJ 41 337 + 297 Gaps:22 77.81 356 32.13 2e-29 Cyclin-D2-2 OS Oryza sativa subsp. japonica GN CYCD2-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q4KYM5|CCD42_ORYSJ 43 272 + 230 Gaps:8 59.53 383 33.33 9e-29 Cyclin-D4-2 OS Oryza sativa subsp. japonica GN CYCD4-2 PE 2 SV 2
blastp_uniprot_sprot sp|Q6YXH8|CCD41_ORYSJ 43 316 + 274 Gaps:37 72.19 356 31.52 8e-28 Cyclin-D4-1 OS Oryza sativa subsp. japonica GN CYCD4-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q53MB7|CCD71_ORYSJ 87 271 + 185 Gaps:18 53.44 320 45.61 2e-27 Putative cyclin-D7-1 OS Oryza sativa subsp. japonica GN CYCD7-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8LGA1|CCD41_ARATH 3 314 + 312 Gaps:39 93.18 308 31.01 2e-27 Cyclin-D4-1 OS Arabidopsis thaliana GN CYCD4-1 PE 1 SV 2
blastp_uniprot_sprot sp|Q69QB8|CCD31_ORYSJ 35 334 + 300 Gaps:24 85.38 342 30.48 4e-27 Cyclin-D3-1 OS Oryza sativa subsp. japonica GN CYCD3-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q0WQN9|CCD42_ARATH 41 230 + 190 Gaps:1 64.09 298 32.98 7e-27 Cyclin-D4-2 OS Arabidopsis thaliana GN CYCD4-2 PE 1 SV 2
rpsblast_cdd gnl|CDD|201025 49 175 + 127 Gaps:9 96.06 127 31.97 1e-20 pfam00134 Cyclin_N Cyclin N-terminal domain. Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold of which this family corresponds with the N-terminal domain.
rpsblast_cdd gnl|CDD|28924 74 167 + 94 Gaps:6 100.00 88 30.68 2e-07 cd00043 CYCLIN Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB is a transcription factor that binds the TATA box. Cyclins TFIIB and RB contain 2 copies of the domain..
rpsblast_cdd gnl|CDD|197692 80 168 + 89 Gaps:6 100.00 83 33.73 7e-07 smart00385 CYCLIN domain present in cyclins TFIIB and Retinoblastoma. A helical domain present in cyclins and TFIIB (twice) and Retinoblastoma (once). A protein recognition domain functioning in cell-cycle and transcription control.
rpsblast_kog gnl|CDD|35875 1 273 + 273 Gaps:5 81.79 335 31.02 2e-41 KOG0656 KOG0656 KOG0656 G1/S-specific cyclin D [Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|35872 40 233 + 194 Gaps:19 46.80 391 26.78 6e-12 KOG0653 KOG0653 KOG0653 Cyclin B and related kinase-activating proteins [Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|35874 75 231 + 157 Gaps:15 39.71 408 29.63 5e-10 KOG0655 KOG0655 KOG0655 G1/S-specific cyclin E [Cell cycle control cell division chromosome partitioning].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 44 271 228 PTHR10177:SF191 none none IPR031093
SMART 80 168 89 SM00385 none domain present in cyclins, TFIIB and Retinoblastoma IPR013763
Gene3D 74 168 95 G3DSA:1.10.472.10 none none IPR013763
Pfam 178 276 99 PF02984 none Cyclin, C-terminal domain IPR004367
SUPERFAMILY 35 174 140 SSF47954 none none IPR013763
Gene3D 169 267 99 G3DSA:1.10.472.10 none none IPR013763
Pfam 47 174 128 PF00134 none Cyclin, N-terminal domain IPR006671
PANTHER 44 271 228 PTHR10177 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1

0 Targeting