5 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0006886 | intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. |
| GO:0016192 | vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
| GO:0005198 | structural molecule activity | The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell. |
| GO:0030130 | clathrin coat of trans-Golgi network vesicle | A clathrin coat found on a vesicle of the trans-Golgi network. |
| GO:0030132 | clathrin coat of coated pit | The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex. |
17 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pper:PRUPE_ppa009427mg | 7 | 261 | + | 255 | Gaps:13 | 86.69 | 293 | 76.38 | 3e-127 | hypothetical protein |
| blastp_kegg | lcl|mdm:103437167 | 7 | 299 | + | 293 | Gaps:21 | 98.95 | 287 | 77.11 | 2e-124 | clathrin light chain 2-like |
| blastp_kegg | lcl|vvi:100248438 | 1 | 299 | + | 299 | Gaps:30 | 100.00 | 319 | 69.28 | 6e-122 | clathrin light chain 2-like |
| blastp_kegg | lcl|mdm:103432815 | 7 | 299 | + | 293 | Gaps:19 | 98.95 | 287 | 71.83 | 6e-121 | clathrin light chain 2-like |
| blastp_kegg | lcl|mdm:103432812 | 7 | 299 | + | 293 | Gaps:26 | 98.94 | 282 | 72.76 | 8e-116 | clathrin light chain 2-like |
| blastp_kegg | lcl|pxb:103958596 | 7 | 299 | + | 293 | Gaps:19 | 98.95 | 287 | 72.89 | 2e-114 | clathrin light chain 2-like |
| blastp_kegg | lcl|pxb:103936540 | 7 | 260 | + | 254 | Gaps:16 | 86.41 | 287 | 73.39 | 2e-112 | clathrin light chain 2-like |
| blastp_kegg | lcl|pmum:103332765 | 7 | 261 | + | 255 | Gaps:18 | 86.46 | 288 | 71.49 | 1e-110 | clathrin light chain 2 |
| blastp_kegg | lcl|pop:POPTR_0008s06670g | 1 | 299 | + | 299 | Gaps:47 | 100.00 | 258 | 64.34 | 1e-96 | POPTRDRAFT_1084600 hypothetical protein |
| blastp_kegg | lcl|pop:POPTR_0010s19770g | 7 | 299 | + | 293 | Gaps:45 | 99.21 | 252 | 62.80 | 6e-93 | POPTRDRAFT_567287 hypothetical protein |
| blastp_uniprot_sprot | sp|O04209|CLC2_ARATH | 56 | 288 | + | 233 | Gaps:16 | 95.74 | 258 | 56.68 | 8e-72 | Clathrin light chain 2 OS Arabidopsis thaliana GN CLC2 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|F4J5M9|CLC3_ARATH | 26 | 270 | + | 245 | Gaps:27 | 84.50 | 258 | 56.42 | 7e-64 | Clathrin light chain 3 OS Arabidopsis thaliana GN At3g51890 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9SKU1|CLC1_ARATH | 106 | 274 | + | 169 | Gaps:1 | 49.70 | 338 | 68.45 | 2e-59 | Clathrin light chain 1 OS Arabidopsis thaliana GN At2g20760 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q7XKE9|CLC1_ORYSJ | 105 | 254 | + | 150 | Gaps:1 | 49.50 | 301 | 69.13 | 4e-58 | Clathrin light chain 1 OS Oryza sativa subsp. japonica GN Os04g0679100 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q6Z3A8|CLC3_ORYSJ | 99 | 254 | + | 156 | Gaps:11 | 44.90 | 363 | 56.44 | 1e-50 | Clathrin light chain 3 OS Oryza sativa subsp. japonica GN Os07g0461500 PE 3 SV 1 |
| blastp_uniprot_sprot | sp|Q5Z402|CLC2_ORYSJ | 14 | 254 | + | 241 | Gaps:27 | 75.60 | 291 | 52.73 | 2e-48 | Clathrin light chain 2 OS Oryza sativa subsp. japonica GN Os06g0731800 PE 2 SV 1 |
| rpsblast_cdd | gnl|CDD|189835 | 43 | 256 | + | 214 | Gaps:39 | 77.78 | 225 | 27.43 | 6e-10 | pfam01086 Clathrin_lg_ch Clathrin light chain. |
4 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Pfam | 112 | 257 | 146 | PF01086 | "Reactome:REACT_11123" | Clathrin light chain | IPR000996 |
| PANTHER | 26 | 299 | 274 | PTHR10639:SF7 | none | none | none |
| PANTHER | 26 | 299 | 274 | PTHR10639 | "Reactome:REACT_11123";signature_desc=CLATHRIN LIGHT CHAIN | none | IPR000996 |
| Coils | 125 | 146 | 22 | Coil | none | none | none |
1 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2015_nEpiBC_3P | Qrob_Chr12 | 12 | s_1B73S5_217 | v_7050_211 | 28,31 | 26,37 | 28,45 | lod | 4.5 | 11.6 |
