Protein : Qrob_P0236160.2 Q. robur
Protein Identifier  ? Qrob_P0236160.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K08915 - light-harvesting complex II chlorophyll a/b binding protein 4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 283  
Kegg Orthology  K08915
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0009765 photosynthesis, light harvesting Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103437223 9 282 + 274 Gaps:7 97.55 286 77.06 6e-147 chlorophyll a-b binding protein CP29.3 chloroplastic-like
blastp_kegg lcl|fve:101300760 7 282 + 276 Gaps:4 99.27 274 76.10 9e-147 chlorophyll a-b binding protein CP29.3 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa009686mg 15 282 + 268 Gaps:6 96.45 282 80.88 2e-146 hypothetical protein
blastp_kegg lcl|pmum:103332771 15 282 + 268 Gaps:6 96.45 282 80.51 5e-146 chlorophyll a-b binding protein CP29.3 chloroplastic
blastp_kegg lcl|gmx:100820335 14 282 + 269 Gaps:2 96.76 278 78.07 2e-145 chlorophyll a-b binding protein CP29.3 chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_001G242100g 10 282 + 273 Gaps:2 98.56 277 76.19 6e-145 hypothetical protein
blastp_kegg lcl|mtr:MTR_3g070340 14 282 + 269 Gaps:1 96.40 278 75.37 6e-144 Chlorophyll a-b binding protein CP29.3
blastp_kegg lcl|cam:101510056 14 282 + 269 Gaps:7 96.38 276 77.44 1e-142 chlorophyll a-b binding protein CP29.3 chloroplastic-like
blastp_kegg lcl|pop:POPTR_0008s06720g 8 282 + 275 Gaps:3 98.91 275 77.94 3e-142 POPTRDRAFT_832587 Chlorophyll a-b binding protein CP29.3
blastp_kegg lcl|rcu:RCOM_0593190 14 282 + 269 Gaps:5 95.74 282 80.74 2e-140 chlorophyll A/B binding protein putative
blastp_pdb 3pl9_A 52 275 + 224 Gaps:2 91.36 243 74.77 2e-119 mol:protein length:243 Chlorophyll A-B binding protein
blastp_pdb 2wsf_1 63 279 + 217 Gaps:51 73.03 241 47.73 2e-33 mol:protein length:241 AT3G54890
blastp_pdb 2wse_1 63 279 + 217 Gaps:51 73.03 241 47.73 2e-33 mol:protein length:241 AT3G54890
blastp_pdb 2wsc_1 63 279 + 217 Gaps:51 73.03 241 47.73 2e-33 mol:protein length:241 AT3G54890
blastp_pdb 2o01_1 64 279 + 216 Gaps:51 93.58 187 47.43 2e-32 mol:protein length:187 AT3g54890
blastp_pdb 3lw5_1 139 279 + 141 Gaps:5 84.71 170 46.53 2e-30 mol:protein length:170 AT3g54890
blastp_pdb 2wsf_2 59 274 + 216 Gaps:79 68.77 269 39.46 2e-23 mol:protein length:269 TYPE II CHLOROPHYLL A/B BINDING PROTEIN FROM
blastp_pdb 2wse_2 59 274 + 216 Gaps:79 68.77 269 39.46 2e-23 mol:protein length:269 TYPE II CHLOROPHYLL A/B BINDING PROTEIN FROM
blastp_pdb 2wsc_2 59 274 + 216 Gaps:79 68.77 269 39.46 2e-23 mol:protein length:269 TYPE II CHLOROPHYLL A/B BINDING PROTEIN FROM
blastp_pdb 2bhw_C 139 278 + 140 Gaps:15 65.95 232 45.10 2e-21 mol:protein length:232 CHLOROPHYLL A-B BINDING PROTEIN AB80
blastp_uniprot_sprot sp|Q9S7W1|CB4C_ARATH 14 282 + 269 Gaps:4 96.74 276 74.91 8e-139 Chlorophyll a-b binding protein CP29.3 chloroplastic OS Arabidopsis thaliana GN LHCB4.3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9XF88|CB4B_ARATH 16 279 + 264 Gaps:8 89.90 287 72.87 4e-128 Chlorophyll a-b binding protein CP29.2 chloroplastic OS Arabidopsis thaliana GN LHCB4.2 PE 1 SV 1
blastp_uniprot_sprot sp|Q07473|CB4A_ARATH 16 279 + 264 Gaps:10 89.66 290 72.31 7e-124 Chlorophyll a-b binding protein CP29.1 chloroplastic OS Arabidopsis thaliana GN LHCB4.1 PE 1 SV 1
blastp_uniprot_sprot sp|Q93WD2|CB29_CHLRE 62 280 + 219 Gaps:4 78.21 280 58.90 6e-81 Chlorophyll a-b binding protein CP29 OS Chlamydomonas reinhardtii GN Lhcb4 PE 1 SV 3
blastp_uniprot_sprot sp|Q01667|CAB6_ARATH 63 279 + 217 Gaps:51 73.03 241 47.73 8e-33 Chlorophyll a-b binding protein 6 chloroplastic OS Arabidopsis thaliana GN LHCA1 PE 1 SV 1
blastp_uniprot_sprot sp|P12360|CB11_SOLLC 63 279 + 217 Gaps:51 71.54 246 46.02 9e-31 Chlorophyll a-b binding protein 6A chloroplastic OS Solanum lycopersicum GN CAB6A PE 2 SV 1
blastp_uniprot_sprot sp|Q9SDM1|CB121_HORVU 63 279 + 217 Gaps:49 71.84 245 47.73 2e-30 Chlorophyll a-b binding protein 1B-21 chloroplastic OS Hordeum vulgare GN LHC Ib-21 PE 1 SV 1
blastp_uniprot_sprot sp|P27524|CB4A_SOLLC 70 274 + 205 Gaps:85 71.88 256 44.57 4e-28 Chlorophyll a-b binding protein CP24 10A chloroplastic OS Solanum lycopersicum GN CAP10A PE 3 SV 1
blastp_uniprot_sprot sp|P27525|CB4B_SOLLC 70 274 + 205 Gaps:85 71.88 256 42.93 4e-27 Chlorophyll a-b binding protein CP24 10B chloroplastic OS Solanum lycopersicum GN CAP10B PE 3 SV 1
blastp_uniprot_sprot sp|P36494|CB4_SPIOL 70 274 + 205 Gaps:85 70.50 261 45.65 4e-27 Chlorophyll a-b binding protein CP24 chloroplastic OS Spinacia oleracea PE 2 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 58 93 36 SSF103511 none none IPR023329
SUPERFAMILY 138 279 142 SSF103511 none none IPR023329
Phobius 209 250 42 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 22 106 85 PTHR21649:SF6 none none none
PANTHER 140 280 141 PTHR21649:SF6 none none none
Phobius 152 171 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 69 266 198 PF00504 none Chlorophyll A-B binding protein IPR022796
Phobius 251 268 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 151 151 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 269 282 14 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 22 106 85 PTHR21649 none none IPR001344
PANTHER 140 280 141 PTHR21649 none none IPR001344
Phobius 172 182 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 183 208 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 62 93 32 G3DSA:1.10.3460.10 none none IPR023329
Gene3D 138 275 138 G3DSA:1.10.3460.10 none none IPR023329

3 Localization

Analysis Start End Length
TMHMM 257 279 22
TMHMM 186 208 22
TMHMM 149 171 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 59   Mitochondrion 4 0.088 0.545 NON-PLANT 59