Protein : Qrob_P0230940.2 Q. robur
Protein Identifier  ? Qrob_P0230940.2 Organism . Name  Quercus robur
Score  13.1 Score Type  egn
Protein Description  (M=5) K14007 - protein transport protein SEC24 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 262  
Kegg Orthology  K14007
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0006888 ER to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO:0030127 COPII vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100265768 1 261 + 261 Gaps:10 23.93 1124 80.30 3e-146 protein transport protein Sec24-like At4g32640-like
blastp_kegg lcl|pop:POPTR_0030s00440g 1 251 + 251 Gaps:6 22.19 1104 87.76 6e-146 transport Sec24 family protein
blastp_kegg lcl|pxb:103956602 1 238 + 238 Gaps:2 21.27 1119 87.39 1e-144 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|mdm:103426073 1 261 + 261 Gaps:12 27.96 962 78.81 1e-143 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|pxb:103952220 1 251 + 251 Gaps:12 24.25 1068 81.85 1e-142 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|pxb:103966045 1 251 + 251 Gaps:12 24.25 1068 81.47 1e-141 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|pxb:103955329 1 251 + 251 Gaps:12 24.05 1077 81.08 2e-141 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|mdm:103416030 1 238 + 238 Gaps:2 28.57 833 84.03 4e-141 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|cam:101494897 1 251 + 251 Gaps:11 24.14 1077 80.77 4e-141 protein transport protein Sec24-like At4g32640-like
blastp_kegg lcl|pop:POPTR_0005s05090g 1 251 + 251 Gaps:11 23.89 1080 81.40 7e-141 transport Sec24 family protein
blastp_pdb 3eh2_C 52 238 + 187 Gaps:3 24.54 766 44.68 2e-45 mol:protein length:766 Protein transport protein Sec24C
blastp_pdb 3eh2_B 52 238 + 187 Gaps:3 24.54 766 44.68 2e-45 mol:protein length:766 Protein transport protein Sec24C
blastp_pdb 3eh2_A 52 238 + 187 Gaps:3 24.54 766 44.68 2e-45 mol:protein length:766 Protein transport protein Sec24C
blastp_pdb 3eg9_B 58 238 + 181 Gaps:3 23.64 770 40.11 3e-39 mol:protein length:770 SEC24 related gene family member D
blastp_pdb 3efo_B 58 238 + 181 Gaps:3 23.64 770 40.11 3e-39 mol:protein length:770 SEC24 related gene family member D
blastp_pdb 3eh1_A 72 238 + 167 Gaps:11 21.04 751 42.41 3e-29 mol:protein length:751 Protein transport protein Sec24B
blastp_pdb 2nut_B 56 249 + 194 Gaps:22 25.50 753 38.54 5e-29 mol:protein length:753 Protein transport protein Sec24A
blastp_pdb 2nup_B 56 249 + 194 Gaps:22 25.50 753 38.54 5e-29 mol:protein length:753 Protein transport protein Sec24A
blastp_pdb 3egx_B 56 249 + 194 Gaps:22 25.67 748 38.54 5e-29 mol:protein length:748 Protein transport protein Sec24A
blastp_pdb 3egd_B 56 249 + 194 Gaps:22 25.67 748 38.54 5e-29 mol:protein length:748 Protein transport protein Sec24A
blastp_uniprot_sprot sp|Q9M081|SC24B_ARATH 4 261 + 258 Gaps:10 24.63 1080 75.19 2e-133 Protein transport protein Sec24-like At4g32640 OS Arabidopsis thaliana GN At4g32640 PE 2 SV 3
blastp_uniprot_sprot sp|Q9M291|SC24C_ARATH 4 247 + 244 Gaps:15 21.44 1096 79.15 9e-120 Protein transport protein Sec24-like CEF OS Arabidopsis thaliana GN CEF PE 2 SV 3
blastp_uniprot_sprot sp|P53992|SC24C_HUMAN 29 238 + 210 Gaps:16 19.74 1094 42.13 2e-46 Protein transport protein Sec24C OS Homo sapiens GN SEC24C PE 1 SV 3
blastp_uniprot_sprot sp|O94855|SC24D_HUMAN 18 238 + 221 Gaps:16 22.00 1032 37.89 3e-41 Protein transport protein Sec24D OS Homo sapiens GN SEC24D PE 1 SV 2
blastp_uniprot_sprot sp|Q9SFU0|SC24A_ARATH 72 251 + 180 Gaps:11 18.02 1038 41.71 1e-40 Protein transport protein Sec24-like At3g07100 OS Arabidopsis thaliana GN At3g07100 PE 2 SV 2
blastp_uniprot_sprot sp|Q1E6U9|SEC24_COCIM 70 238 + 169 Gaps:4 17.70 932 42.42 3e-34 Protein transport protein SEC24 OS Coccidioides immitis (strain RS) GN SEC24 PE 3 SV 2
blastp_uniprot_sprot sp|Q7S4P3|SEC24_NEUCR 71 238 + 168 Gaps:4 17.26 950 42.07 2e-33 Protein transport protein sec24 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN sec24 PE 3 SV 1
blastp_uniprot_sprot sp|Q2ULI0|SEC24_ASPOR 57 238 + 182 Gaps:10 19.93 913 41.76 4e-33 Protein transport protein sec24 OS Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN sec24 PE 3 SV 1
blastp_uniprot_sprot sp|A4QUL1|SEC24_MAGO7 71 238 + 168 Gaps:4 17.10 959 41.46 8e-33 Protein transport protein SEC24 OS Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN SEC24 PE 3 SV 1
blastp_uniprot_sprot sp|Q2HH63|SEC24_CHAGB 71 238 + 168 Gaps:4 17.32 947 42.68 9e-33 Protein transport protein SEC24 OS Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN SEC24 PE 3 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 238 238 PTHR13803:SF9 none none none
Gene3D 63 233 171 G3DSA:2.60.40.1670 none none none
Pfam 202 238 37 PF04811 "Reactome:REACT_11123" Sec23/Sec24 trunk domain IPR006896
SUPERFAMILY 3 112 110 SSF81995 none none none
SUPERFAMILY 114 200 87 SSF82919 "Reactome:REACT_11123" none IPR006895
SUPERFAMILY 202 247 46 SSF53300 none none IPR002035
Pfam 126 165 40 PF04810 "Reactome:REACT_11123" Sec23/Sec24 zinc finger IPR006895
PANTHER 1 238 238 PTHR13803 none none none

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting