Protein : Qrob_P0227970.2 Q. robur
Protein Identifier  ? Qrob_P0227970.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR11142:SF1 - PSEUDOURIDYLATE SYNTHASE-RELATED Code Enzyme  EC:5.4.99.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 373  
Kegg Orthology  K06173
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0001522 pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
GO:0009451 RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
GO:0009982 pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100259448 2 372 + 371 Gaps:9 96.32 380 77.60 0.0 tRNA pseudouridine synthase A-like
blastp_kegg lcl|pxb:103946351 1 372 + 372 Gaps:23 100.00 361 78.95 0.0 tRNA pseudouridine synthase-like 1
blastp_kegg lcl|tcc:TCM_006169 1 372 + 372 Gaps:3 99.20 374 77.63 0.0 Pseudouridine synthase family protein isoform 1
blastp_kegg lcl|pxb:103944983 1 372 + 372 Gaps:23 100.00 361 78.39 0.0 tRNA pseudouridine synthase-like 1
blastp_kegg lcl|mdm:103411048 1 372 + 372 Gaps:23 100.00 361 77.84 0.0 tRNA pseudouridine synthase-like 1
blastp_kegg lcl|mdm:103431788 1 372 + 372 Gaps:23 100.00 361 78.12 0.0 tRNA pseudouridine synthase-like 1
blastp_kegg lcl|fve:101313377 1 372 + 372 Gaps:24 100.00 350 78.29 0.0 tRNA pseudouridine synthase A-like
blastp_kegg lcl|sot:102591350 1 372 + 372 Gaps:2 96.14 389 70.86 0.0 tRNA pseudouridine synthase-like 1-like
blastp_kegg lcl|pmum:103319020 1 372 + 372 Gaps:18 100.00 364 78.30 0.0 tRNA pseudouridine synthase-like 1
blastp_kegg lcl|mdm:103402419 1 372 + 372 Gaps:24 100.00 358 77.37 0.0 tRNA pseudouridine synthase-like 1
blastp_pdb 2nre_A 50 372 + 323 Gaps:84 93.70 270 36.36 1e-28 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nr0_D 50 372 + 323 Gaps:84 93.70 270 36.36 1e-28 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nr0_C 50 372 + 323 Gaps:84 93.70 270 36.36 1e-28 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nr0_B 50 372 + 323 Gaps:84 93.70 270 36.36 1e-28 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nr0_A 50 372 + 323 Gaps:84 93.70 270 36.36 1e-28 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nqp_D 50 372 + 323 Gaps:84 93.70 270 36.36 1e-28 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nqp_C 50 372 + 323 Gaps:84 93.70 270 36.36 1e-28 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nqp_B 50 372 + 323 Gaps:84 93.70 270 36.36 1e-28 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 2nqp_A 50 372 + 323 Gaps:84 93.70 270 36.36 1e-28 mol:protein length:270 tRNA pseudouridine synthase A
blastp_pdb 1dj0_B 50 372 + 323 Gaps:84 95.83 264 36.36 1e-28 mol:protein length:264 PSEUDOURIDINE SYNTHASE I
blastp_uniprot_sprot sp|Q168C1|TRUA_ROSDO 52 372 + 321 Gaps:71 96.92 260 43.25 8e-48 tRNA pseudouridine synthase A OS Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|A9ILJ7|TRUA_BART1 52 369 + 318 Gaps:77 100.00 247 42.91 3e-45 tRNA pseudouridine synthase A OS Bartonella tribocorum (strain CIP 105476 / IBS 506) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|A8F079|TRUA_RICCK 52 240 + 189 Gaps:15 71.84 245 47.16 7e-43 tRNA pseudouridine synthase A OS Rickettsia canadensis (strain McKiel) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|B6IPI0|TRUA_RHOCS 52 369 + 318 Gaps:79 100.00 245 48.98 1e-42 tRNA pseudouridine synthase A OS Rhodospirillum centenum (strain ATCC 51521 / SW) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|B6JJP6|TRUA_OLICO 52 369 + 318 Gaps:75 100.00 245 45.71 2e-42 tRNA pseudouridine synthase A OS Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|Q8N0Z8|PUSL1_HUMAN 54 369 + 316 Gaps:66 89.77 303 42.65 3e-42 tRNA pseudouridine synthase-like 1 OS Homo sapiens GN PUSL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q98D55|TRUA_RHILO 52 369 + 318 Gaps:73 99.60 248 44.13 4e-42 tRNA pseudouridine synthase A OS Rhizobium loti (strain MAFF303099) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZCA3|TRUA_RICPR 52 240 + 189 Gaps:15 71.84 245 44.89 8e-42 tRNA pseudouridine synthase A OS Rickettsia prowazekii (strain Madrid E) GN truA PE 3 SV 2
blastp_uniprot_sprot sp|A8GQ80|TRUA_RICAH 52 240 + 189 Gaps:15 71.84 245 46.59 8e-42 tRNA pseudouridine synthase A OS Rickettsia akari (strain Hartford) GN truA PE 3 SV 1
blastp_uniprot_sprot sp|A7HPQ3|TRUA_PARL1 52 370 + 319 Gaps:75 100.00 246 45.53 8e-42 tRNA pseudouridine synthase A OS Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN truA PE 3 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 51 245 195 SSF55120 none none IPR020103
SUPERFAMILY 306 370 65 SSF55120 none none IPR020103
PANTHER 300 370 71 PTHR11142 none none IPR001406
Gene3D 51 170 120 G3DSA:3.30.70.580 none none IPR020094
PANTHER 6 249 244 PTHR11142 none none IPR001406
Gene3D 171 242 72 G3DSA:3.30.70.660 none none IPR020095
Gene3D 303 368 66 G3DSA:3.30.70.660 none none IPR020095
Pfam 208 370 163 PF01416 none tRNA pseudouridine synthase IPR020097
Pfam 58 168 111 PF01416 none tRNA pseudouridine synthase IPR020097
PANTHER 6 249 244 PTHR11142:SF1 none none none
PANTHER 300 370 71 PTHR11142:SF1 none none none

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting