Protein : Qrob_P0215870.2 Q. robur
Protein Identifier  ? Qrob_P0215870.2 Organism . Name  Quercus robur
Score  95.0 Score Type  egn
Protein Description  (M=1) K10858 - DNA mismatch repair protein PMS2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 976  
Kegg Orthology  K10858
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006298 mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO:0030983 mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.
GO:0032300 mismatch repair complex Any complex formed of proteins that act in mismatch repair.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101311942 1 969 + 969 Gaps:92 99.34 913 72.88 0.0 mismatch repair endonuclease PMS2-like
blastp_kegg lcl|rcu:RCOM_1177300 1 968 + 968 Gaps:75 99.24 924 72.85 0.0 DNA mismatch repair protein pms2 putative
blastp_kegg lcl|vvi:100255596 3 966 + 964 Gaps:103 97.44 937 70.97 0.0 mismatch repair endonuclease PMS2-like
blastp_kegg lcl|tcc:TCM_004628 5 966 + 962 Gaps:171 99.02 1017 64.95 0.0 DNA mismatch repair protein pms2 putative isoform 1
blastp_kegg lcl|pop:POPTR_0014s12530g 8 967 + 960 Gaps:72 98.80 915 71.90 0.0 POPTRDRAFT_572706 DNA mismatch repair family protein
blastp_kegg lcl|mdm:103449151 1 969 + 969 Gaps:141 99.29 985 67.69 0.0 DNA mismatch repair protein PMS1
blastp_kegg lcl|cmo:103492825 3 975 + 973 Gaps:79 99.46 921 66.70 0.0 DNA mismatch repair protein PMS1
blastp_kegg lcl|csv:101231315 3 975 + 973 Gaps:79 99.46 921 66.59 0.0 mismatch repair endonuclease PMS2-like
blastp_kegg lcl|csv:101210654 3 975 + 973 Gaps:79 99.46 921 66.59 0.0 mismatch repair endonuclease PMS2-like
blastp_kegg lcl|gmx:100802535 12 969 + 958 Gaps:98 98.73 946 63.81 0.0 DNA mismatch repair protein PMS1-like
blastp_pdb 1h7u_B 1 397 + 397 Gaps:74 99.45 365 47.66 2e-95 mol:protein length:365 MISMATCH REPAIR ENDONUCLEASE PMS2
blastp_pdb 1h7u_A 1 397 + 397 Gaps:74 99.45 365 47.66 2e-95 mol:protein length:365 MISMATCH REPAIR ENDONUCLEASE PMS2
blastp_pdb 1h7s_B 1 397 + 397 Gaps:74 99.45 365 47.66 2e-95 mol:protein length:365 PMS1 PROTEIN HOMOLOG 2
blastp_pdb 1h7s_A 1 397 + 397 Gaps:74 99.45 365 47.66 2e-95 mol:protein length:365 PMS1 PROTEIN HOMOLOG 2
blastp_pdb 1ea6_B 1 397 + 397 Gaps:74 99.73 364 47.66 2e-95 mol:protein length:364 PMS1 PROTEIN HOMOLOG 2
blastp_pdb 1ea6_A 1 397 + 397 Gaps:74 99.73 364 47.66 2e-95 mol:protein length:364 PMS1 PROTEIN HOMOLOG 2
blastp_pdb 3h4l_B 8 398 + 391 Gaps:77 97.55 367 41.90 5e-70 mol:protein length:367 DNA mismatch repair protein PMS1
blastp_pdb 3h4l_A 8 398 + 391 Gaps:77 97.55 367 41.90 5e-70 mol:protein length:367 DNA mismatch repair protein PMS1
blastp_pdb 3na3_A 12 185 + 174 Gaps:1 49.71 348 38.73 4e-30 mol:protein length:348 DNA mismatch repair protein Mlh1
blastp_pdb 1b62_A 12 181 + 170 Gaps:1 47.61 355 37.87 3e-27 mol:protein length:355 PROTEIN (MUTL)
blastp_uniprot_sprot sp|Q941I6|PMS1_ARATH 12 958 + 947 Gaps:92 95.23 923 61.55 0.0 DNA mismatch repair protein PMS1 OS Arabidopsis thaliana GN PMS1 PE 1 SV 1
blastp_uniprot_sprot sp|P54278|PMS2_HUMAN 1 964 + 964 Gaps:89 65.43 862 49.65 6e-91 Mismatch repair endonuclease PMS2 OS Homo sapiens GN PMS2 PE 1 SV 2
blastp_uniprot_sprot sp|Q54QA0|PMS1_DICDI 12 962 + 951 Gaps:118 60.47 1022 44.98 2e-81 Mismatch repair endonuclease pms1 OS Dictyostelium discoideum GN pms1 PE 3 SV 1
blastp_uniprot_sprot sp|P54279|PMS2_MOUSE 2 964 + 963 Gaps:86 65.19 859 46.61 2e-71 Mismatch repair endonuclease PMS2 OS Mus musculus GN Pms2 PE 2 SV 1
blastp_uniprot_sprot sp|P54280|PMS1_SCHPO 10 964 + 955 Gaps:73 65.37 794 46.44 1e-69 DNA mismatch repair protein pms1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN pms1 PE 3 SV 1
blastp_uniprot_sprot sp|P14242|PMS1_YEAST 10 961 + 952 Gaps:91 63.00 873 44.36 8e-69 DNA mismatch repair protein PMS1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PMS1 PE 1 SV 3
blastp_uniprot_sprot sp|A4D2B8|PM2P1_HUMAN 11 177 + 167 none 37.95 440 56.29 7e-52 Putative postmeiotic segregation increased 2-like protein 1 OS Homo sapiens GN PMS2P1 PE 5 SV 1
blastp_uniprot_sprot sp|O95744|PM2P2_HUMAN 11 177 + 167 Gaps:3 57.24 297 54.12 4e-51 Putative postmeiotic segregation increased 2-like protein 2 OS Homo sapiens GN PMS2P2 PE 5 SV 1
blastp_uniprot_sprot sp|P54277|PMS1_HUMAN 12 399 + 388 Gaps:65 36.37 932 33.92 9e-44 PMS1 protein homolog 1 OS Homo sapiens GN PMS1 PE 1 SV 1
blastp_uniprot_sprot sp|A6TR78|MUTL_ALKMQ 12 959 + 948 Gaps:100 84.93 637 33.46 8e-39 DNA mismatch repair protein MutL OS Alkaliphilus metalliredigens (strain QYMF) GN mutL PE 3 SV 1

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 181 201 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 246 975 730 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 12 186 175 G3DSA:3.30.565.10 none none IPR003594
PANTHER 10 186 177 PTHR10073 none none none
Phobius 1 180 180 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 766 959 194 SSF118116 none none none
SMART 770 927 158 SM00853 none MutL C terminal dimerisation domain IPR014790
Phobius 202 221 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 31 136 106 PF13589 none Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase none
Gene3D 260 397 138 G3DSA:3.30.230.10 none none IPR014721
SUPERFAMILY 26 185 160 SSF55874 none none IPR003594
Phobius 222 245 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 769 927 159 PF08676 none MutL C terminal dimerisation domain IPR014790
Pfam 279 397 119 PF01119 none DNA mismatch repair protein, C-terminal domain IPR013507
SUPERFAMILY 261 398 138 SSF54211 none none IPR020568
ProSitePatterns 102 108 7 PS00058 none DNA mismatch repair proteins mutL / hexB / PMS1 signature. IPR014762
PANTHER 241 974 734 PTHR10073 none none none
PANTHER 10 186 177 PTHR10073:SF9 none none IPR028831
PANTHER 241 974 734 PTHR10073:SF9 none none IPR028831

2 Localization

Analysis Start End Length
TMHMM 182 201 19
TMHMM 222 244 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting