Protein : Qrob_P0214620.2 Q. robur
Protein Identifier  ? Qrob_P0214620.2 Organism . Name  Quercus robur
Score  82.1 Score Type  egn
Protein Description  (M=3) PTHR23079:SF5 - RNA-DEPENDENT RNA POLYMERASE 2 (PTHR23079:SF5) Code Enzyme  EC:2.7.7.48
Gene Prediction Quality  validated Protein length 

Sequence

Length: 563  
Kegg Orthology  K11699
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003968 RNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103338320 1 561 + 561 Gaps:84 55.91 1100 65.04 0.0 RNA-dependent RNA polymerase 2
blastp_kegg lcl|cit:102611197 1 562 + 562 Gaps:84 54.47 1131 64.45 0.0 RNA-dependent RNA polymerase 2-like
blastp_kegg lcl|cmo:103493922 1 561 + 561 Gaps:84 55.06 1117 64.23 0.0 RNA-dependent RNA polymerase 2
blastp_kegg lcl|tcc:TCM_012022 1 562 + 562 Gaps:85 53.70 1149 64.51 0.0 RNA-dependent RNA polymerase 2 isoform 1
blastp_kegg lcl|rcu:RCOM_1511600 1 562 + 562 Gaps:84 62.67 983 63.31 0.0 RNA-dependent RNA polymerase putative
blastp_kegg lcl|gmx:100808274 1 562 + 562 Gaps:92 55.13 1121 65.21 0.0 RNA-dependent RNA polymerase 2-like
blastp_kegg lcl|vvi:100260325 1 562 + 562 Gaps:84 54.66 1127 63.47 0.0 RNA-dependent RNA polymerase 2-like
blastp_kegg lcl|fve:101296862 1 562 + 562 Gaps:84 54.23 1136 63.31 0.0 RNA-dependent RNA polymerase 2-like
blastp_kegg lcl|csv:101209921 1 561 + 561 Gaps:84 55.06 1117 63.90 0.0 RNA-dependent RNA polymerase 2-like
blastp_kegg lcl|cam:101489233 1 562 + 562 Gaps:89 55.17 1122 64.46 0.0 RNA-dependent RNA polymerase 2-like
blastp_uniprot_sprot sp|O82504|RDR2_ARATH 1 561 + 561 Gaps:82 54.10 1133 56.77 0.0 RNA-dependent RNA polymerase 2 OS Arabidopsis thaliana GN RDR2 PE 1 SV 1
blastp_uniprot_sprot sp|Q7XM31|RDR2_ORYSJ 1 561 + 561 Gaps:92 54.14 1136 52.68 0.0 Probable RNA-dependent RNA polymerase 2 OS Oryza sativa subsp. japonica GN RDR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LQV2|RDR1_ARATH 1 561 + 561 Gaps:125 54.38 1107 44.35 1e-138 RNA-dependent RNA polymerase 1 OS Arabidopsis thaliana GN RDR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DXS3|RDR1_ORYSJ 1 561 + 561 Gaps:125 81.35 740 43.02 1e-130 Probable RNA-dependent RNA polymerase 1 OS Oryza sativa subsp. japonica GN RDR1 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LHH9|SHL2_ORYSJ 1 561 + 561 Gaps:140 51.81 1218 36.93 2e-92 Probable RNA-dependent RNA polymerase SHL2 OS Oryza sativa subsp. japonica GN SHL2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SG02|RDR6_ARATH 1 561 + 561 Gaps:123 53.01 1196 35.49 6e-87 RNA-dependent RNA polymerase 6 OS Arabidopsis thaliana GN RDR6 PE 1 SV 1
blastp_uniprot_sprot sp|O14227|RDR1_SCHPO 1 435 + 435 Gaps:99 38.85 1215 33.47 5e-53 RNA-dependent RNA polymerase 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rdr1 PE 1 SV 1
blastp_uniprot_sprot sp|O82188|RDR5_ARATH 9 444 + 436 Gaps:101 50.87 977 26.96 6e-20 Probable RNA-dependent RNA polymerase 5 OS Arabidopsis thaliana GN RDR5 PE 2 SV 2
blastp_uniprot_sprot sp|O82190|RDR3_ARATH 5 454 + 450 Gaps:109 52.32 992 25.82 1e-16 Probable RNA-dependent RNA polymerase 3 OS Arabidopsis thaliana GN RDR3 PE 3 SV 2
blastp_uniprot_sprot sp|O82189|RDR4_ARATH 7 434 + 428 Gaps:111 52.32 927 24.74 5e-13 Probable RNA-dependent RNA polymerase 4 OS Arabidopsis thaliana GN RDR4 PE 3 SV 2
rpsblast_cdd gnl|CDD|203192 1 436 + 436 Gaps:118 79.53 508 39.60 6e-80 pfam05183 RdRP RNA dependent RNA polymerase. This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates.
rpsblast_kog gnl|CDD|36206 1 561 + 561 Gaps:118 53.71 1145 36.42 1e-127 KOG0988 KOG0988 KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 561 561 PTHR23079 none none IPR007855
Pfam 2 173 172 PF05183 none RNA dependent RNA polymerase IPR007855
Pfam 186 444 259 PF05183 none RNA dependent RNA polymerase IPR007855
PANTHER 1 561 561 PTHR23079:SF5 none none none

0 Localization

0 Qtllist

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 17   Mitochondrion 3 0.036 0.737 NON-PLANT 17