Protein : Qrob_P0214610.2 Q. robur
Protein Identifier  ? Qrob_P0214610.2 Organism . Name  Quercus robur
Score  63.0 Score Type  egn
Protein Description  (M=3) PTHR23079:SF5 - RNA-DEPENDENT RNA POLYMERASE 2 (PTHR23079:SF5) Code Enzyme  EC:2.7.7.48
Gene Prediction Quality  validated Protein length 

Sequence

Length: 469  
Kegg Orthology  K11699
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0003968 RNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000513mg 5 468 + 464 Gaps:9 41.95 1118 64.61 0.0 hypothetical protein
blastp_kegg lcl|pmum:103338320 1 468 + 468 Gaps:20 41.27 1100 65.64 0.0 RNA-dependent RNA polymerase 2
blastp_kegg lcl|cmo:103493922 6 468 + 463 Gaps:8 41.81 1117 62.31 0.0 RNA-dependent RNA polymerase 2
blastp_kegg lcl|fve:101296862 6 468 + 463 Gaps:10 41.11 1136 62.31 0.0 RNA-dependent RNA polymerase 2-like
blastp_kegg lcl|pop:POPTR_0015s08500g 1 468 + 468 Gaps:16 41.98 1110 64.38 0.0 POPTRDRAFT_575133 hypothetical protein
blastp_kegg lcl|vvi:100260325 5 468 + 464 Gaps:8 41.53 1127 63.03 0.0 RNA-dependent RNA polymerase 2-like
blastp_kegg lcl|cam:101489233 4 468 + 465 Gaps:7 41.89 1122 62.55 0.0 RNA-dependent RNA polymerase 2-like
blastp_kegg lcl|tcc:TCM_012022 2 468 + 467 Gaps:7 41.08 1149 62.71 0.0 RNA-dependent RNA polymerase 2 isoform 1
blastp_kegg lcl|cit:102611197 8 468 + 461 Gaps:25 42.79 1131 61.78 0.0 RNA-dependent RNA polymerase 2-like
blastp_kegg lcl|csv:101209921 6 468 + 463 Gaps:8 41.81 1117 62.53 0.0 RNA-dependent RNA polymerase 2-like
blastp_uniprot_sprot sp|O82504|RDR2_ARATH 5 468 + 464 Gaps:15 41.75 1133 54.55 9e-171 RNA-dependent RNA polymerase 2 OS Arabidopsis thaliana GN RDR2 PE 1 SV 1
blastp_uniprot_sprot sp|Q7XM31|RDR2_ORYSJ 9 468 + 460 Gaps:12 40.85 1136 38.15 3e-96 Probable RNA-dependent RNA polymerase 2 OS Oryza sativa subsp. japonica GN RDR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LQV2|RDR1_ARATH 9 468 + 460 Gaps:25 41.28 1107 32.17 5e-53 RNA-dependent RNA polymerase 1 OS Arabidopsis thaliana GN RDR1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SG02|RDR6_ARATH 148 468 + 321 Gaps:31 26.92 1196 24.53 2e-18 RNA-dependent RNA polymerase 6 OS Arabidopsis thaliana GN RDR6 PE 1 SV 1
blastp_uniprot_sprot sp|Q0DXS3|RDR1_ORYSJ 378 468 + 91 Gaps:2 12.03 740 51.69 7e-18 Probable RNA-dependent RNA polymerase 1 OS Oryza sativa subsp. japonica GN RDR1 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LHH9|SHL2_ORYSJ 212 468 + 257 Gaps:25 22.17 1218 25.19 4e-16 Probable RNA-dependent RNA polymerase SHL2 OS Oryza sativa subsp. japonica GN SHL2 PE 2 SV 1
rpsblast_cdd gnl|CDD|203192 378 468 + 91 Gaps:19 14.17 508 40.28 2e-08 pfam05183 RdRP RNA dependent RNA polymerase. This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates.
rpsblast_kog gnl|CDD|36206 8 468 + 461 Gaps:55 41.22 1145 24.36 1e-57 KOG0988 KOG0988 KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 121 468 348 PTHR23079:SF5 none none none
PANTHER 121 468 348 PTHR23079 none none IPR007855
Pfam 379 468 90 PF05183 none RNA dependent RNA polymerase IPR007855
SUPERFAMILY 6 70 65 SSF54928 none none none
Gene3D 8 70 63 G3DSA:3.30.70.330 none none IPR012677

0 Localization

0 Qtllist

0 Targeting