Protein : Qrob_P0213810.2 Q. robur
Protein Identifier  ? Qrob_P0213810.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR12081//PTHR12081:SF39 - TRANSCRIPTION FACTOR E2F // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 472  
Kegg Orthology  K06620
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005667 transcription factor complex A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa005262mg 1 471 + 471 Gaps:17 100.00 470 74.47 0.0 hypothetical protein
blastp_kegg lcl|pmum:103341709 1 471 + 471 Gaps:17 100.00 470 74.04 0.0 transcription factor E2FA
blastp_kegg lcl|vvi:100249486 4 470 + 467 Gaps:14 92.97 498 74.95 0.0 transcription factor E2FA-like
blastp_kegg lcl|pxb:103940761 1 471 + 471 Gaps:18 100.00 469 72.92 0.0 transcription factor E2FA-like
blastp_kegg lcl|tcc:TCM_022853 27 454 + 428 Gaps:24 92.50 480 72.75 0.0 E2F transcription factor 3 isoform 1
blastp_kegg lcl|mdm:103449517 1 467 + 467 Gaps:18 99.57 467 71.83 0.0 transcription factor E2FA
blastp_kegg lcl|pxb:103961726 27 471 + 445 Gaps:12 99.77 444 73.59 0.0 transcription factor E2FA-like
blastp_kegg lcl|fve:101292239 27 471 + 445 Gaps:10 94.33 476 70.82 0.0 transcription factor E2FA-like
blastp_kegg lcl|gmx:100811762 1 471 + 471 Gaps:19 100.00 468 70.09 0.0 transcription factor E2FA-like
blastp_kegg lcl|gmx:100809283 1 471 + 471 Gaps:23 100.00 466 69.74 0.0 transcription factor E2FA-like
blastp_pdb 1cf7_A 141 211 + 71 Gaps:2 96.05 76 69.86 5e-24 mol:protein length:76 PROTEIN (TRANSCRIPTION FACTOR E2F-4)
blastp_pdb 2aze_B 225 325 + 101 Gaps:7 88.68 106 31.91 4e-06 mol:protein length:106 Transcription factor E2F1
blastp_uniprot_sprot sp|Q9FNY0|E2FA_ARATH 24 471 + 448 Gaps:59 93.40 485 61.81 2e-167 Transcription factor E2FA OS Arabidopsis thaliana GN E2FA PE 1 SV 1
blastp_uniprot_sprot sp|Q9FV71|E2FB_ARATH 27 444 + 418 Gaps:45 91.90 469 53.36 6e-135 Transcription factor E2FB OS Arabidopsis thaliana GN E2FB PE 1 SV 1
blastp_uniprot_sprot sp|Q9FV70|E2FC_ARATH 111 423 + 313 Gaps:52 68.94 396 56.04 3e-79 Transcription factor E2FC OS Arabidopsis thaliana GN E2FC PE 1 SV 1
blastp_uniprot_sprot sp|Q61502|E2F5_MOUSE 134 327 + 194 Gaps:10 59.10 335 51.01 1e-49 Transcription factor E2F5 OS Mus musculus GN E2f5 PE 1 SV 2
blastp_uniprot_sprot sp|Q62814|E2F5_RAT 142 327 + 186 Gaps:5 61.67 300 52.43 1e-48 Transcription factor E2F5 (Fragment) OS Rattus norvegicus GN E2f5 PE 2 SV 1
blastp_uniprot_sprot sp|Q15329|E2F5_HUMAN 143 327 + 185 Gaps:5 53.18 346 51.63 1e-46 Transcription factor E2F5 OS Homo sapiens GN E2F5 PE 1 SV 1
blastp_uniprot_sprot sp|Q16254|E2F4_HUMAN 145 327 + 183 Gaps:12 43.83 413 53.04 3e-45 Transcription factor E2F4 OS Homo sapiens GN E2F4 PE 1 SV 2
blastp_uniprot_sprot sp|Q8R0K9|E2F4_MOUSE 145 327 + 183 Gaps:12 44.15 410 53.04 8e-45 Transcription factor E2F4 OS Mus musculus GN E2f4 PE 2 SV 1
blastp_uniprot_sprot sp|O35261|E2F3_MOUSE 137 337 + 201 Gaps:11 43.33 457 47.98 8e-45 Transcription factor E2F3 OS Mus musculus GN E2f3 PE 1 SV 2
blastp_uniprot_sprot sp|O00716|E2F3_HUMAN 137 337 + 201 Gaps:11 42.58 465 47.98 1e-44 Transcription factor E2F3 OS Homo sapiens GN E2F3 PE 1 SV 1
rpsblast_cdd gnl|CDD|202203 145 210 + 66 Gaps:1 100.00 67 67.16 3e-26 pfam02319 E2F_TDP E2F/DP family winged-helix DNA-binding domain. This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2 which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2 the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric and amino acids that contact these bases are conserved among all known E2F and DP proteins.
rpsblast_kog gnl|CDD|37788 114 447 + 334 Gaps:25 87.85 354 40.84 6e-66 KOG2577 KOG2577 KOG2577 Transcription factor E2F/dimerization partner (TDP) [Transcription].
rpsblast_kog gnl|CDD|37789 145 270 + 126 Gaps:9 30.15 388 32.48 8e-12 KOG2578 KOG2578 KOG2578 Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 161 182 22 Coil none none none
Pfam 145 210 66 PF02319 none E2F/DP family winged-helix DNA-binding domain IPR003316
SUPERFAMILY 145 208 64 SSF46785 none none none
PANTHER 62 451 390 PTHR12081 none none IPR015633
Gene3D 143 212 70 G3DSA:1.10.10.10 none none IPR011991
SUPERFAMILY 223 327 105 SSF144074 none none none
Coils 223 258 36 Coil none none none
PANTHER 62 451 390 PTHR12081:SF39 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 32   Mitochondrion 4 0.038 0.688 NON-PLANT 32