Protein : Qrob_P0210190.2 Q. robur
Protein Identifier  ? Qrob_P0210190.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR18934//PTHR18934:SF81 - ATP-DEPENDENT RNA HELICASE // SUBFAMILY NOT NAMED (PTHR18934:SF81) Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1339  
Kegg Orthology  K12818
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0008026 ATP-dependent helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO:0004386 helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100254070 10 1337 + 1328 Gaps:24 79.00 1686 67.49 0.0 putative uncharacterized protein At4g01020 chloroplastic-like
blastp_kegg lcl|tcc:TCM_001034 5 1337 + 1333 Gaps:27 76.00 1758 66.92 0.0 Helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related putative isoform 1
blastp_kegg lcl|cit:102610569 26 1333 + 1308 Gaps:18 76.07 1730 65.20 0.0 putative uncharacterized protein At4g01020 chloroplastic-like
blastp_kegg lcl|cit:102626830 26 1333 + 1308 Gaps:18 76.07 1730 65.20 0.0 putative uncharacterized protein At4g01020 chloroplastic-like
blastp_kegg lcl|cit:102607192 26 1333 + 1308 Gaps:18 76.07 1730 65.20 0.0 putative uncharacterized protein At4g01020 chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10024688mg 26 1333 + 1308 Gaps:18 76.07 1730 64.97 0.0 hypothetical protein
blastp_kegg lcl|gmx:100810008 6 1337 + 1332 Gaps:32 75.53 1729 66.46 0.0 HELRP putative uncharacterized protein At4g01020 chloroplastic-like
blastp_kegg lcl|cam:101513809 1 1336 + 1336 Gaps:18 76.70 1734 63.98 0.0 putative uncharacterized protein At4g01020 chloroplastic-like
blastp_kegg lcl|pmum:103334037 25 1336 + 1312 Gaps:19 76.04 1724 64.91 0.0 putative uncharacterized protein At4g01020 chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa000122mg 25 1336 + 1312 Gaps:19 76.04 1724 64.68 0.0 hypothetical protein
blastp_pdb 3kx2_A 195 921 + 727 Gaps:69 93.35 767 34.64 3e-105 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 3kx2_B 195 921 + 727 Gaps:69 93.35 767 34.64 3e-105 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 2xau_B 195 921 + 727 Gaps:69 92.63 773 34.64 3e-105 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 2xau_A 195 921 + 727 Gaps:69 92.63 773 34.64 3e-105 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 3llm_B 277 450 + 174 Gaps:8 74.89 235 36.93 6e-26 mol:protein length:235 ATP-dependent RNA helicase A
blastp_pdb 3llm_A 277 450 + 174 Gaps:8 74.89 235 36.93 6e-26 mol:protein length:235 ATP-dependent RNA helicase A
blastp_pdb 3i4u_A 668 920 + 253 Gaps:24 85.56 270 32.47 1e-20 mol:protein length:270 ATP-dependent RNA helicase DHX8
blastp_uniprot_sprot sp|P0CE10|Y4102_ARATH 2 1337 + 1336 Gaps:37 75.38 1787 58.35 0.0 Putative uncharacterized protein At4g01020 chloroplastic OS Arabidopsis thaliana GN At4g01020 PE 4 SV 1
blastp_uniprot_sprot sp|Q38953|DHX8_ARATH 253 928 + 676 Gaps:49 56.08 1168 39.08 2e-128 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS Arabidopsis thaliana GN At3g26560 PE 1 SV 2
blastp_uniprot_sprot sp|Q09530|MOG5_CAEEL 208 910 + 703 Gaps:59 56.83 1200 37.39 3e-119 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS Caenorhabditis elegans GN mog-5 PE 1 SV 1
blastp_uniprot_sprot sp|Q54F05|DHX8_DICDI 267 910 + 644 Gaps:42 53.79 1160 38.14 2e-118 ATP-dependent RNA helicase dhx8 OS Dictyostelium discoideum GN dhx8 PE 3 SV 1
blastp_uniprot_sprot sp|Q14562|DHX8_HUMAN 275 918 + 644 Gaps:45 51.07 1220 37.88 5e-117 ATP-dependent RNA helicase DHX8 OS Homo sapiens GN DHX8 PE 1 SV 1
blastp_uniprot_sprot sp|A2A4P0|DHX8_MOUSE 275 918 + 644 Gaps:45 50.08 1244 37.88 1e-116 ATP-dependent RNA helicase DHX8 OS Mus musculus GN Dhx8 PE 2 SV 1
blastp_uniprot_sprot sp|O42643|PRP22_SCHPO 255 910 + 656 Gaps:45 54.37 1168 36.69 5e-111 Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp22 PE 1 SV 1
blastp_uniprot_sprot sp|P53131|PRP43_YEAST 195 921 + 727 Gaps:69 93.35 767 34.64 1e-104 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PRP43 PE 1 SV 1
blastp_uniprot_sprot sp|Q92620|PRP16_HUMAN 208 910 + 703 Gaps:77 56.07 1227 34.74 2e-104 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS Homo sapiens GN DHX38 PE 1 SV 2
blastp_uniprot_sprot sp|Q10752|CDC28_SCHPO 276 910 + 635 Gaps:48 58.67 1055 36.83 3e-104 Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cdc28 PE 3 SV 2
rpsblast_cdd gnl|CDD|31829 276 908 + 633 Gaps:44 76.57 845 36.32 1e-129 COG1643 HrpA HrpA-like helicases [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|162629 267 939 + 673 Gaps:52 51.68 1283 34.24 1e-102 TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long while its paralog HrpB also uncharacterized is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
rpsblast_cdd gnl|CDD|182986 275 801 + 527 Gaps:31 41.27 1294 37.45 5e-91 PRK11131 PRK11131 ATP-dependent RNA helicase HrpA Provisional.

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 509 607 99 SM00490 none helicase superfamily c-terminal domain IPR001650
Pfam 826 909 84 PF07717 none Oligonucleotide/oligosaccharide-binding (OB)-fold IPR011709
Pfam 289 436 148 PF00270 none DEAD/DEAH box helicase IPR011545
PANTHER 119 1013 895 PTHR18934 none none none
Gene3D 1183 1295 113 G3DSA:3.30.70.330 none none IPR012677
Gene3D 1052 1119 68 G3DSA:3.30.70.330 none none IPR012677
ProSiteProfiles 287 451 165 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
Pfam 668 763 96 PF04408 none Helicase associated domain (HA2) IPR007502
SMART 667 763 97 SM00847 none Helicase associated domain (HA2) Add an annotation IPR007502
Pfam 522 606 85 PF00271 none Helicase conserved C-terminal domain IPR001650
ProSitePatterns 393 402 10 PS00690 none DEAH-box subfamily ATP-dependent helicases signature. IPR002464
SUPERFAMILY 272 807 536 SSF52540 none none IPR027417
PANTHER 119 1013 895 PTHR18934:SF81 none none none
ProSiteProfiles 482 647 166 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
Gene3D 487 623 137 G3DSA:3.40.50.300 none none IPR027417
Gene3D 277 435 159 G3DSA:3.40.50.300 none none IPR027417
SMART 275 460 186 SM00487 none DEAD-like helicases superfamily IPR014001

0 Localization

0 Qtllist

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 32   Mitochondrion 5 0.035 0.622 NON-PLANT 32