Protein : Qrob_P0208310.2 Q. robur
Protein Identifier  ? Qrob_P0208310.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR10809//PTHR10809:SF45 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // SUBFAMILY NOT NAMED (PTHR10809:SF45) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 334  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005789 endoplasmic reticulum membrane The lipid bilayer surrounding the endoplasmic reticulum.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103318534 1 332 + 332 Gaps:11 99.69 326 58.46 1e-109 vesicle-associated protein 2-2
blastp_kegg lcl|mdm:103419485 1 332 + 332 Gaps:40 84.02 438 54.62 1e-103 vesicle-associated protein 2-2-like
blastp_kegg lcl|pxb:103934024 1 332 + 332 Gaps:15 83.05 413 56.27 2e-103 vesicle-associated protein 2-2-like
blastp_kegg lcl|pxb:103962873 1 332 + 332 Gaps:27 81.53 379 57.93 1e-95 vesicle-associated protein 2-2-like
blastp_kegg lcl|mdm:103450980 1 332 + 332 Gaps:27 81.53 379 57.28 1e-93 vesicle-associated protein 2-2
blastp_kegg lcl|gmx:100779920 1 332 + 332 Gaps:86 85.24 481 46.10 3e-83 vesicle-associated protein 2-2-like
blastp_kegg lcl|cic:CICLE_v10001215mg 1 331 + 331 Gaps:41 83.80 432 51.10 8e-83 hypothetical protein
blastp_kegg lcl|cit:102627426 1 331 + 331 Gaps:41 83.80 432 51.10 8e-83 vesicle-associated protein 2-2-like
blastp_kegg lcl|tcc:TCM_025968 1 333 + 333 Gaps:38 81.84 380 54.66 8e-80 Vamp/synaptobrevin-associated protein 27-2 putative isoform 1
blastp_kegg lcl|pvu:PHAVU_007G183900g 1 332 + 332 Gaps:81 84.89 470 44.61 2e-75 hypothetical protein
blastp_uniprot_sprot sp|B9DHD7|VAP22_ARATH 1 331 + 331 Gaps:46 81.61 386 45.40 2e-48 Vesicle-associated protein 2-2 OS Arabidopsis thaliana GN PVA22 PE 1 SV 1
blastp_uniprot_sprot sp|Q8VZ95|VAP11_ARATH 1 67 + 67 Gaps:2 25.39 256 52.31 2e-14 Vesicle-associated protein 1-1 OS Arabidopsis thaliana GN PVA11 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SHC8|VAP12_ARATH 1 67 + 67 Gaps:2 27.20 239 47.69 2e-12 Vesicle-associated protein 1-2 OS Arabidopsis thaliana GN PVA12 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LVU1|VAP21_ARATH 1 87 + 87 Gaps:1 40.00 220 40.91 2e-11 Vesicle-associated protein 2-1 OS Arabidopsis thaliana GN PVA21 PE 2 SV 1
blastp_uniprot_sprot sp|Q84WW5|VAP13_ARATH 1 60 + 60 Gaps:2 25.94 239 50.00 9e-11 Vesicle-associated protein 1-3 OS Arabidopsis thaliana GN PVA13 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SYC9|VAP14_ARATH 1 67 + 67 Gaps:2 21.72 571 41.94 8e-08 Vesicle-associated protein 1-4 OS Arabidopsis thaliana GN PVA14 PE 2 SV 1
blastp_uniprot_sprot sp|O82213|VAP31_ARATH 1 61 + 61 none 40.94 149 39.34 3e-07 Vesicle-associated protein 3-1 OS Arabidopsis thaliana GN PVA31 PE 3 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 2 63 62 SSF49354 none none IPR008962
PANTHER 205 333 129 PTHR10809 "Reactome:REACT_22258";signature_desc=VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN none IPR016763
PANTHER 1 63 63 PTHR10809 "Reactome:REACT_22258";signature_desc=VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN none IPR016763
Phobius 332 333 2 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Coils 248 290 43 Coil none none none
Phobius 1 309 309 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 5 54 50 G3DSA:2.60.40.360 none none IPR008962
PANTHER 1 63 63 PTHR10809:SF45 none none none
PANTHER 205 333 129 PTHR10809:SF45 none none none
ProSiteProfiles 1 56 56 PS50202 none Major sperm protein (MSP) domain profile. IPR000535
Phobius 310 331 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 310 332 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting