Protein : Qrob_P0208140.2 Q. robur
Protein Identifier  ? Qrob_P0208140.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR10910//PTHR10910:SF86 - EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 572  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003725 double-stranded RNA binding Interacting selectively and non-covalently with double-stranded RNA.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa025249mg 5 562 + 558 Gaps:33 99.81 532 70.06 0.0 hypothetical protein
blastp_kegg lcl|pmum:103318547 5 562 + 558 Gaps:49 99.81 528 68.12 0.0 double-stranded RNA-binding protein 2-like
blastp_kegg lcl|pxb:103934041 5 554 + 550 Gaps:31 98.36 550 68.58 0.0 double-stranded RNA-binding protein 3-like
blastp_kegg lcl|rcu:RCOM_1429110 5 571 + 567 Gaps:55 100.00 568 62.85 0.0 hypothetical protein
blastp_kegg lcl|fve:101304819 5 562 + 558 Gaps:43 99.81 536 68.04 0.0 double-stranded RNA-binding protein 2-like
blastp_kegg lcl|mdm:103450989 5 559 + 555 Gaps:35 93.31 583 68.93 0.0 double-stranded RNA-binding protein 3-like
blastp_kegg lcl|vvi:100245249 5 555 + 551 Gaps:47 100.00 532 65.04 0.0 double-stranded RNA-binding protein 2-like
blastp_kegg lcl|pxb:103954457 5 554 + 550 Gaps:38 98.38 555 67.77 0.0 double-stranded RNA-binding protein 3-like
blastp_kegg lcl|pop:POPTR_0013s03270g 5 571 + 567 Gaps:42 100.00 577 59.79 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0005s04720g 5 570 + 566 Gaps:41 99.83 576 60.35 0.0 hypothetical protein
blastp_pdb 2l2m_A 99 172 + 74 Gaps:1 97.40 77 38.67 5e-09 mol:protein length:77 Hyponastic leave 1
blastp_pdb 3adi_C 3 73 + 71 Gaps:2 97.26 73 42.25 4e-08 mol:protein length:73 F21M12.9 protein
blastp_pdb 3adi_B 3 73 + 71 Gaps:2 97.26 73 42.25 4e-08 mol:protein length:73 F21M12.9 protein
blastp_pdb 3adi_A 3 73 + 71 Gaps:2 97.26 73 42.25 4e-08 mol:protein length:73 F21M12.9 protein
blastp_pdb 3adg_A 3 73 + 71 Gaps:2 97.26 73 42.25 4e-08 mol:protein length:73 F21M12.9 protein
blastp_pdb 2l2n_A 5 73 + 69 Gaps:2 66.99 103 43.48 1e-07 mol:protein length:103 Hyponastic leave 1
blastp_pdb 3adj_A 103 172 + 70 Gaps:1 93.42 76 38.03 2e-07 mol:protein length:76 F21M12.9 protein
blastp_uniprot_sprot sp|Q0DKP4|DRB2_ORYSJ 5 274 + 270 Gaps:24 43.17 593 65.23 5e-100 Double-stranded RNA-binding protein 2 OS Oryza sativa subsp. japonica GN DRB2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LJF5|DRB3_ARATH 5 219 + 215 Gaps:25 52.92 359 72.63 1e-87 Double-stranded RNA-binding protein 3 OS Arabidopsis thaliana GN DRB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GY79|DRB5_ARATH 5 229 + 225 Gaps:28 51.15 393 69.65 7e-87 Double-stranded RNA-binding protein 5 OS Arabidopsis thaliana GN DRB5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SKN2|DRB2_ARATH 5 212 + 208 Gaps:19 43.55 434 73.54 8e-83 Double-stranded RNA-binding protein 2 OS Arabidopsis thaliana GN DRB2 PE 1 SV 1
blastp_uniprot_sprot sp|B7E321|DRB5_ORYSJ 5 171 + 167 Gaps:13 38.12 404 81.82 5e-79 Double-stranded RNA-binding protein 5 OS Oryza sativa subsp. japonica GN DRB5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9AV50|DRB6_ORYSJ 5 234 + 230 Gaps:19 41.05 514 65.88 4e-72 Double-stranded RNA-binding protein 6 OS Oryza sativa subsp. japonica GN DRB6 PE 2 SV 1
blastp_uniprot_sprot sp|Q8H1D4|DRB4_ARATH 5 182 + 178 Gaps:21 44.23 355 45.86 5e-31 Double-stranded RNA-binding protein 4 OS Arabidopsis thaliana GN DBR4 PE 1 SV 1
blastp_uniprot_sprot sp|Q5N8Z0|DRB1_ORYSJ 5 188 + 184 Gaps:36 57.37 441 45.06 2e-30 Double-stranded RNA-binding protein 1 OS Oryza sativa subsp. japonica GN DRB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0IQN6|DRB8_ORYSJ 5 182 + 178 Gaps:17 38.44 424 40.49 2e-23 Double-stranded RNA-binding protein 8 OS Oryza sativa subsp. japonica GN DRB8 PE 2 SV 1
blastp_uniprot_sprot sp|Q0IV63|DRB7_ORYSJ 5 182 + 178 Gaps:17 34.46 473 40.49 3e-23 Double-stranded RNA-binding protein 7 OS Oryza sativa subsp. japonica GN DRB7 PE 2 SV 1
rpsblast_cdd gnl|CDD|200945 7 170 + 164 Gaps:1 100.00 66 45.45 3e-13 pfam00035 dsrm Double-stranded RNA binding motif. Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans which is part of the cellular response to dsRNA.
rpsblast_cdd gnl|CDD|28930 6 170 + 165 Gaps:3 98.53 68 53.73 6e-12 cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR RNA helicases Drosophila staufen protein E. coli RNase III RNases H1 and dsRNA dependent adenosine deaminases..
rpsblast_cdd gnl|CDD|178863 6 173 + 168 Gaps:11 30.57 229 50.00 3e-11 PRK00102 rnc ribonuclease III Reviewed.

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 7 72 66 PF00035 none Double-stranded RNA binding motif IPR014720
Pfam 105 169 65 PF00035 none Double-stranded RNA binding motif IPR014720
Gene3D 6 72 67 G3DSA:3.30.160.20 none none IPR014720
Gene3D 105 171 67 G3DSA:3.30.160.20 none none IPR014720
SMART 105 171 67 SM00358 none Double-stranded RNA binding motif IPR014720
SMART 6 73 68 SM00358 none Double-stranded RNA binding motif IPR014720
ProSiteProfiles 5 74 70 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
SUPERFAMILY 105 183 79 SSF54768 none none none
ProSiteProfiles 104 172 69 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
Coils 389 410 22 Coil none none none
SUPERFAMILY 6 72 67 SSF54768 none none none
PANTHER 5 215 211 PTHR10910:SF86 none none IPR031147
PANTHER 5 215 211 PTHR10910 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting