Protein : Qrob_P0206760.2 Q. robur
Protein Identifier  ? Qrob_P0206760.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) K00108 - choline dehydrogenase [EC:1.1.99.1] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 390  
Kegg Orthology  K00108
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0050660 flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103933322 1 389 + 389 Gaps:89 82.01 578 50.21 1e-151 protein HOTHEAD-like
blastp_kegg lcl|mdm:103441237 1 389 + 389 Gaps:89 82.01 578 49.37 6e-147 protein HOTHEAD-like
blastp_kegg lcl|cic:CICLE_v10019611mg 3 389 + 387 Gaps:59 80.07 542 52.53 8e-142 hypothetical protein
blastp_kegg lcl|cit:102629671 3 389 + 387 Gaps:59 80.52 539 52.07 1e-138 protein HOTHEAD-like
blastp_kegg lcl|pop:POPTR_0012s13760g 1 389 + 389 Gaps:45 83.08 467 55.93 1e-138 hypothetical protein
blastp_kegg lcl|vvi:100241724 1 389 + 389 Gaps:74 82.28 553 49.01 6e-133 protein HOTHEAD-like
blastp_kegg lcl|vvi:100266705 1 389 + 389 Gaps:90 81.83 578 47.99 3e-131 protein HOTHEAD-like
blastp_kegg lcl|tcc:TCM_015068 7 389 + 383 Gaps:83 78.01 582 48.68 6e-130 Glucose-methanol-choline (GMC) oxidoreductase family protein putative
blastp_kegg lcl|fve:101296575 1 389 + 389 Gaps:84 81.85 573 46.70 3e-129 protein HOTHEAD-like
blastp_kegg lcl|crb:CARUB_v10028412mg 1 389 + 389 Gaps:79 78.76 579 48.68 4e-129 hypothetical protein
blastp_pdb 1ju2_B 15 389 + 375 Gaps:71 79.10 536 33.96 1e-63 mol:protein length:536 hydroxynitrile lyase
blastp_pdb 1ju2_A 15 389 + 375 Gaps:71 79.10 536 33.96 1e-63 mol:protein length:536 hydroxynitrile lyase
blastp_pdb 3gdp_B 15 389 + 375 Gaps:71 81.38 521 33.96 1e-63 mol:protein length:521 R-oxynitrile lyase isoenzyme 1
blastp_pdb 3gdp_A 15 389 + 375 Gaps:71 81.38 521 33.96 1e-63 mol:protein length:521 R-oxynitrile lyase isoenzyme 1
blastp_pdb 3gdn_B 15 389 + 375 Gaps:71 81.38 521 33.96 1e-63 mol:protein length:521 R-oxynitrile lyase isoenzyme 1
blastp_pdb 3gdn_A 15 389 + 375 Gaps:71 81.38 521 33.96 1e-63 mol:protein length:521 R-oxynitrile lyase isoenzyme 1
blastp_pdb 2jbv_B 168 388 + 221 Gaps:70 47.07 546 24.12 6e-08 mol:protein length:546 CHOLINE OXIDASE
blastp_pdb 2jbv_A 168 388 + 221 Gaps:70 47.07 546 24.12 6e-08 mol:protein length:546 CHOLINE OXIDASE
blastp_pdb 3nne_H 168 388 + 221 Gaps:70 47.07 546 24.12 7e-08 mol:protein length:546 Choline oxidase
blastp_pdb 3nne_G 168 388 + 221 Gaps:70 47.07 546 24.12 7e-08 mol:protein length:546 Choline oxidase
blastp_uniprot_sprot sp|Q9S746|HTH_ARATH 1 389 + 389 Gaps:92 79.63 594 40.80 1e-99 Protein HOTHEAD OS Arabidopsis thaliana GN HTH PE 1 SV 1
blastp_uniprot_sprot sp|Q9SSM2|MDLL_ARATH 2 389 + 388 Gaps:78 80.43 552 36.94 3e-77 (R)-mandelonitrile lyase-like OS Arabidopsis thaliana GN At1g73050 PE 2 SV 1
blastp_uniprot_sprot sp|P52706|MDL1_PRUSE 15 389 + 375 Gaps:79 75.31 563 35.85 2e-65 (R)-mandelonitrile lyase 1 OS Prunus serotina GN MDL1 PE 1 SV 1
blastp_uniprot_sprot sp|P52707|MDL3_PRUSE 15 389 + 375 Gaps:70 74.17 573 33.18 1e-64 (R)-mandelonitrile lyase 3 OS Prunus serotina GN MDL3 PE 2 SV 1
blastp_uniprot_sprot sp|O24243|MDL1_PRUDU 15 389 + 375 Gaps:72 76.03 559 33.41 4e-64 (R)-mandelonitrile lyase 1 OS Prunus dulcis GN MDL1 PE 2 SV 1
blastp_uniprot_sprot sp|O50048|MDL2_PRUSE 15 389 + 375 Gaps:70 73.78 576 32.94 7e-63 (R)-mandelonitrile lyase 2 OS Prunus serotina GN MDL2 PE 2 SV 1
blastp_uniprot_sprot sp|Q945K2|MDL2_PRUDU 15 389 + 375 Gaps:71 75.31 563 33.96 8e-63 (R)-mandelonitrile lyase 2 OS Prunus dulcis GN MDL2 PE 1 SV 1
blastp_uniprot_sprot sp|O82784|MDL4_PRUSE 15 389 + 375 Gaps:70 74.04 574 32.71 9e-59 (R)-mandelonitrile lyase 4 OS Prunus serotina GN MDL4 PE 2 SV 1
blastp_uniprot_sprot sp|A7MFA8|BETA_CROS8 101 388 + 288 Gaps:97 59.21 559 25.08 2e-10 Oxygen-dependent choline dehydrogenase OS Cronobacter sakazakii (strain ATCC BAA-894) GN betA PE 3 SV 1
blastp_uniprot_sprot sp|B7UJG4|BETA_ECO27 106 388 + 283 Gaps:98 58.45 556 23.08 7e-08 Oxygen-dependent choline dehydrogenase OS Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN betA PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 106 196 91 PF00732 none GMC oxidoreductase IPR000172
SUPERFAMILY 230 345 116 SSF54373 none none none
SUPERFAMILY 341 388 48 SSF51905 none none none
SUPERFAMILY 37 197 161 SSF51905 none none none
PANTHER 1 389 389 PTHR11552:SF59 none none none
Gene3D 340 389 50 G3DSA:3.50.50.60 none none none
Gene3D 254 268 15 G3DSA:3.50.50.60 none none none
Gene3D 10 213 204 G3DSA:3.50.50.60 none none none
PANTHER 1 389 389 PTHR11552 none none none
Pfam 244 388 145 PF05199 none GMC oxidoreductase IPR007867

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5

0 Targeting