Protein : Qrob_P0206040.2 Q. robur
Protein Identifier  ? Qrob_P0206040.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K12271 - signal recognition particle 43 kDa protein Code Enzyme  EC:3.6.5.4
Gene Prediction Quality  validated Protein length 

Sequence

Length: 292  
Kegg Orthology  K12271
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0009507 chloroplast A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
GO:0009416 response to light stimulus Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
GO:0045038 protein import into chloroplast thylakoid membrane The import of proteins into the chloroplast thylakoid membranes. Proteins that are destined for the thylakoid lumen require two uptake-targeting sequences: the first targets the protein to the stroma, and the second targets the protein from the stroma to the thylakoid lumen. Four separate thylakoid-import systems deal with the proteins once they are in the stroma.
GO:0080085 signal recognition particle, chloroplast targeting A complex consisting of a protein and RNA component which binds the signal sequence of some proteins and facilitates their export to the chloroplast.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0009s14260g 1 290 + 290 Gaps:3 76.05 380 78.89 5e-159 POPTRDRAFT_557028 chaos family protein
blastp_kegg lcl|pmum:103334888 1 275 + 275 Gaps:2 71.65 381 78.39 5e-152 signal recognition particle 43 kDa protein chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa008415mg 1 286 + 286 Gaps:4 85.89 333 75.52 2e-150 hypothetical protein
blastp_kegg lcl|pxb:103942461 1 286 + 286 Gaps:4 73.52 389 75.52 6e-149 signal recognition particle 43 kDa protein chloroplastic
blastp_kegg lcl|tcc:TCM_006528 1 291 + 291 Gaps:2 72.07 401 76.47 1e-148 Chloroplast signal recognition particle component
blastp_kegg lcl|mdm:103445244 1 286 + 286 Gaps:4 73.52 389 75.87 5e-148 signal recognition particle 43 kDa protein chloroplastic
blastp_kegg lcl|fve:101299641 1 275 + 275 Gaps:3 73.91 368 77.57 4e-146 signal recognition particle 43 kDa protein chloroplastic-like
blastp_kegg lcl|rcu:RCOM_1431980 1 275 + 275 Gaps:3 68.69 396 79.78 3e-144 ankyrin repeat domain protein putative
blastp_kegg lcl|cam:101515136 1 289 + 289 Gaps:9 74.07 378 72.86 2e-142 signal recognition particle 43 kDa protein chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10028628mg 1 275 + 275 Gaps:3 69.92 389 79.04 3e-142 hypothetical protein
blastp_pdb 3ui2_A 1 233 + 233 Gaps:5 93.44 244 70.61 5e-110 mol:protein length:244 Signal recognition particle 43 kDa protein c
blastp_pdb 3dep_A 1 172 + 172 Gaps:4 91.80 183 71.43 2e-81 mol:protein length:183 Signal recognition particle 43 kDa protein
blastp_pdb 3deo_A 1 172 + 172 Gaps:4 91.80 183 71.43 2e-81 mol:protein length:183 Signal recognition particle 43 kDa protein
blastp_pdb 2hug_A 171 225 + 55 Gaps:1 94.74 57 68.52 6e-16 mol:protein length:57 Signal recognition particle 43 kDa protein c
blastp_pdb 1x3q_A 171 225 + 55 Gaps:1 94.74 57 68.52 6e-16 mol:protein length:57 cpSRP43
blastp_pdb 1x3p_A 226 275 + 50 none 92.59 54 60.00 2e-14 mol:protein length:54 cpSRP43
blastp_pdb 1n0r_A 18 170 + 153 Gaps:28 99.21 126 71.20 5e-12 mol:protein length:126 4 ankyrin repeats
blastp_pdb 1x32_A 1 29 + 29 none 61.70 47 79.31 1e-10 mol:protein length:47 chloroplast signal recognition particle compo
blastp_pdb 1n0q_B 30 139 + 110 Gaps:5 98.92 93 64.13 4e-09 mol:protein length:93 3 ankyrin repeats
blastp_pdb 1n0q_A 30 139 + 110 Gaps:5 98.92 93 64.13 4e-09 mol:protein length:93 3 ankyrin repeats
blastp_uniprot_sprot sp|O22265|SR43C_ARATH 1 275 + 275 Gaps:5 72.39 373 68.89 7e-130 Signal recognition particle 43 kDa protein chloroplastic OS Arabidopsis thaliana GN CAO PE 1 SV 2
blastp_uniprot_sprot sp|Q8LSQ2|SR43C_ORYSJ 1 278 + 278 Gaps:3 71.91 388 56.27 3e-105 Probable signal recognition particle 43 kDa protein chloroplastic OS Oryza sativa subsp. japonica GN Os03g0131900 PE 2 SV 1
blastp_uniprot_sprot sp|Q6DGX3|ANR54_DANRE 36 182 + 147 Gaps:7 46.35 315 37.67 3e-11 Ankyrin repeat domain-containing protein 54 OS Danio rerio GN ankrd54 PE 2 SV 1
blastp_uniprot_sprot sp|Q1LZC5|ANR54_BOVIN 53 196 + 144 Gaps:6 46.82 299 35.71 4e-10 Ankyrin repeat domain-containing protein 54 OS Bos taurus GN ANKRD54 PE 2 SV 1
blastp_uniprot_sprot sp|Q6NXT1|ANR54_HUMAN 53 169 + 117 Gaps:2 39.00 300 36.75 6e-10 Ankyrin repeat domain-containing protein 54 OS Homo sapiens GN ANKRD54 PE 1 SV 2
blastp_uniprot_sprot sp|Q91WK7|ANR54_MOUSE 53 169 + 117 Gaps:2 39.13 299 36.75 7e-10 Ankyrin repeat domain-containing protein 54 OS Mus musculus GN Ankrd54 PE 1 SV 1
blastp_uniprot_sprot sp|Q566C8|ANR54_RAT 53 169 + 117 Gaps:2 39.13 299 36.75 7e-10 Ankyrin repeat domain-containing protein 54 OS Rattus norvegicus GN Ankrd54 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SAR5|AKR2_ARATH 59 140 + 82 Gaps:1 23.68 342 43.21 2e-09 Ankyrin repeat domain-containing protein 2 OS Arabidopsis thaliana GN AKR2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9ULT8|HECD1_HUMAN 57 141 + 85 Gaps:3 3.14 2610 40.24 5e-09 E3 ubiquitin-protein ligase HECTD1 OS Homo sapiens GN HECTD1 PE 1 SV 3
blastp_uniprot_sprot sp|Q3UES3|TNKS2_MOUSE 34 136 + 103 Gaps:7 8.58 1166 39.00 5e-09 Tankyrase-2 OS Mus musculus GN Tnks2 PE 2 SV 2

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 98 130 33 PS50088 none Ankyrin repeat profile. IPR002110
Gene3D 30 169 140 G3DSA:1.25.40.20 none none IPR020683
ProSiteProfiles 57 139 83 PS50297 none Ankyrin repeat region circular profile. IPR020683
Gene3D 173 221 49 G3DSA:2.40.50.40 none none none
SMART 225 276 52 SM00298 none Chromatin organization modifier domain IPR000953
SMART 173 224 52 SM00298 none Chromatin organization modifier domain IPR000953
SUPERFAMILY 28 141 114 SSF48403 none none IPR020683
SUPERFAMILY 173 222 50 SSF54160 none none IPR016197
SUPERFAMILY 228 275 48 SSF54160 none none IPR016197
ProSiteProfiles 226 283 58 PS50013 none Chromo and chromo shadow domain profile. IPR000953
Gene3D 227 275 49 G3DSA:2.40.50.40 none none none
ProSiteProfiles 64 96 33 PS50088 none Ankyrin repeat profile. IPR002110
Pfam 229 273 45 PF00385 none Chromo (CHRromatin Organisation MOdifier) domain IPR023780
PANTHER 1 275 275 PTHR24128:SF11 none none IPR030300
Pfam 84 139 56 PF13857 none Ankyrin repeats (many copies) none
SMART 64 93 30 SM00248 none ankyrin repeats IPR002110
SMART 98 127 30 SM00248 none ankyrin repeats IPR002110
PANTHER 1 275 275 PTHR24128 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4

0 Targeting