4 GO Terms
Identifier | Name | Description |
---|---|---|
GO:0006508 | proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
GO:0008236 | serine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). |
GO:0004252 | serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). |
GO:0070008 | serine-type exopeptidase activity | Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). |
38 Blast
Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
---|---|---|---|---|---|---|---|---|---|---|---|
blastp_kegg | lcl|pmum:103321175 | 1 | 667 | + | 667 | Gaps:6 | 92.07 | 731 | 78.75 | 0.0 | prolyl endopeptidase-like |
blastp_kegg | lcl|vvi:100267810 | 1 | 667 | + | 667 | Gaps:6 | 92.07 | 731 | 79.49 | 0.0 | prolyl endopeptidase-like |
blastp_kegg | lcl|pop:POPTR_0005s26860g | 1 | 667 | + | 667 | Gaps:6 | 92.07 | 731 | 78.75 | 0.0 | POPTRDRAFT_761565 prolyl oligopeptidase family protein |
blastp_kegg | lcl|pop:POPTR_0005s26870g | 1 | 667 | + | 667 | Gaps:8 | 92.09 | 733 | 78.96 | 0.0 | POPTRDRAFT_831700 prolyl oligopeptidase family protein |
blastp_kegg | lcl|pop:POPTR_0002s01540g | 1 | 667 | + | 667 | Gaps:6 | 92.07 | 731 | 78.45 | 0.0 | POPTRDRAFT_815978 prolyl oligopeptidase family protein |
blastp_kegg | lcl|csv:101220524 | 1 | 667 | + | 667 | Gaps:6 | 92.07 | 731 | 79.05 | 0.0 | prolyl endopeptidase-like |
blastp_kegg | lcl|cmo:103493792 | 1 | 667 | + | 667 | Gaps:6 | 85.95 | 783 | 79.49 | 0.0 | prolyl endopeptidase-like |
blastp_kegg | lcl|mdm:103413820 | 1 | 667 | + | 667 | Gaps:10 | 85.44 | 783 | 78.92 | 0.0 | prolyl endopeptidase-like |
blastp_kegg | lcl|pper:PRUPE_ppa001441mg | 1 | 667 | + | 667 | Gaps:6 | 81.28 | 828 | 77.71 | 0.0 | hypothetical protein |
blastp_kegg | lcl|gmx:100776544 | 1 | 667 | + | 667 | Gaps:10 | 92.02 | 727 | 78.77 | 0.0 | prolyl endopeptidase-like |
blastp_pdb | 1e5t_A | 11 | 667 | + | 657 | Gaps:21 | 91.83 | 710 | 55.37 | 0.0 | mol:protein length:710 PROLYL ENDOPEPTIDASE |
blastp_pdb | 3ddu_A | 11 | 667 | + | 657 | Gaps:21 | 91.96 | 709 | 55.37 | 0.0 | mol:protein length:709 Prolyl endopeptidase |
blastp_pdb | 4an1_A | 11 | 667 | + | 657 | Gaps:21 | 91.83 | 710 | 55.37 | 0.0 | mol:protein length:710 PROLYL ENDOPEPTIDASE |
blastp_pdb | 4an0_A | 11 | 667 | + | 657 | Gaps:21 | 91.83 | 710 | 55.37 | 0.0 | mol:protein length:710 PROLYL ENDOPEPTIDASE |
blastp_pdb | 4amz_A | 11 | 667 | + | 657 | Gaps:21 | 91.83 | 710 | 55.37 | 0.0 | mol:protein length:710 PROLYL ENDOPEPTIDASE |
blastp_pdb | 4amy_A | 11 | 667 | + | 657 | Gaps:21 | 91.83 | 710 | 55.37 | 0.0 | mol:protein length:710 PROLYL ENDOPEPTIDASE |
blastp_pdb | 3eq9_A | 11 | 667 | + | 657 | Gaps:21 | 91.83 | 710 | 55.37 | 0.0 | mol:protein length:710 Prolyl endopeptidase |
blastp_pdb | 3eq8_A | 11 | 667 | + | 657 | Gaps:21 | 91.83 | 710 | 55.37 | 0.0 | mol:protein length:710 Prolyl endopeptidase |
blastp_pdb | 3eq7_A | 11 | 667 | + | 657 | Gaps:21 | 91.83 | 710 | 55.37 | 0.0 | mol:protein length:710 Prolyl endopeptidase |
blastp_pdb | 2xdw_A | 11 | 667 | + | 657 | Gaps:21 | 91.83 | 710 | 55.37 | 0.0 | mol:protein length:710 PROLYL ENDOPEPTIDASE |
blastp_uniprot_sprot | sp|Q9QUR6|PPCE_MOUSE | 11 | 667 | + | 657 | Gaps:21 | 91.83 | 710 | 55.83 | 0.0 | Prolyl endopeptidase OS Mus musculus GN Prep PE 2 SV 1 |
blastp_uniprot_sprot | sp|P48147|PPCE_HUMAN | 11 | 667 | + | 657 | Gaps:21 | 91.83 | 710 | 55.52 | 0.0 | Prolyl endopeptidase OS Homo sapiens GN PREP PE 1 SV 2 |
blastp_uniprot_sprot | sp|P23687|PPCE_PIG | 11 | 667 | + | 657 | Gaps:21 | 91.83 | 710 | 55.37 | 0.0 | Prolyl endopeptidase OS Sus scrofa GN PREP PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q9XTA2|PPCE_BOVIN | 11 | 667 | + | 657 | Gaps:21 | 91.83 | 710 | 55.52 | 0.0 | Prolyl endopeptidase OS Bos taurus GN PREP PE 2 SV 1 |
blastp_uniprot_sprot | sp|O70196|PPCE_RAT | 11 | 667 | + | 657 | Gaps:21 | 91.83 | 710 | 55.67 | 0.0 | Prolyl endopeptidase OS Rattus norvegicus GN Prep PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q06903|PPCE_AERHY | 11 | 667 | + | 657 | Gaps:51 | 91.30 | 690 | 42.22 | 4e-142 | Prolyl endopeptidase OS Aeromonas hydrophila PE 1 SV 2 |
blastp_uniprot_sprot | sp|P27028|PPCE_ELIME | 11 | 664 | + | 654 | Gaps:54 | 88.79 | 705 | 40.89 | 1e-138 | Prolyl endopeptidase OS Elizabethkingia meningoseptica GN f1pep1 PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q86AS5|PPCE_DICDI | 11 | 666 | + | 656 | Gaps:86 | 92.63 | 760 | 37.64 | 4e-136 | Prolyl endopeptidase OS Dictyostelium discoideum GN prep PE 1 SV 1 |
blastp_uniprot_sprot | sp|P27195|PPCF_ELIMR | 11 | 666 | + | 656 | Gaps:48 | 89.08 | 705 | 38.54 | 6e-131 | Prolyl endopeptidase OS Elizabethkingia miricola PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q59536|PTRB_MORLA | 11 | 666 | + | 656 | Gaps:74 | 91.59 | 690 | 28.01 | 9e-49 | Protease 2 OS Moraxella lacunata GN ptrB PE 3 SV 1 |
14 Domain Motifs
Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
---|---|---|---|---|---|---|---|
PANTHER | 11 | 666 | 656 | PTHR11757 | none | none | IPR002470 |
Pfam | 496 | 666 | 171 | PF00326 | none | Prolyl oligopeptidase family | IPR001375 |
Pfam | 14 | 429 | 416 | PF02897 | none | Prolyl oligopeptidase, N-terminal beta-propeller domain | IPR023302 |
Gene3D | 450 | 666 | 217 | G3DSA:3.40.50.1820 | none | none | IPR029058 |
PANTHER | 11 | 666 | 656 | PTHR11757:SF2 | none | none | none |
SUPERFAMILY | 451 | 665 | 215 | SSF53474 | none | none | IPR029058 |
Gene3D | 82 | 436 | 355 | G3DSA:2.130.10.120 | none | none | IPR023302 |
SUPERFAMILY | 10 | 429 | 420 | SSF50993 | none | none | none |
PRINTS | 536 | 555 | 20 | PR00862 | none | Prolyl oligopeptidase serine protease (S9A) signature | IPR002470 |
PRINTS | 481 | 499 | 19 | PR00862 | none | Prolyl oligopeptidase serine protease (S9A) signature | IPR002470 |
PRINTS | 508 | 532 | 25 | PR00862 | none | Prolyl oligopeptidase serine protease (S9A) signature | IPR002470 |
PRINTS | 642 | 664 | 23 | PR00862 | none | Prolyl oligopeptidase serine protease (S9A) signature | IPR002470 |
PRINTS | 566 | 586 | 21 | PR00862 | none | Prolyl oligopeptidase serine protease (S9A) signature | IPR002470 |
ProSitePatterns | 543 | 573 | 31 | PS00708 | none | Prolyl endopeptidase family serine active site. | IPR002471 |
15 Qtllist
Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
---|---|---|---|---|---|---|---|---|---|---|
Bourran1_2003_QTL2_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 87 | lod | 3,3 | 8,7 |
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf | Qrob_Chr02 | 2 | s_1AQA4Z_1644 | s_1AK5QX_947 | 53.67 | 14,01 | 79,68 | lod | 5.6594 | 0.03 |
Bourran1_2004_QTL2_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1AW12F_382 | s_1A77MR_223 | 42 | 6 | 64 | lod | 3,6 | 9,6 |
Bourran2_2002_QTL9_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1BFNDA_375 | s_1A3VA1_2139 | 32,5 | 17 | 62 | lod | 3,1 | 4,2 |
Bourran2_2003_QTL8_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1ANG6_1446 | v_11270_161 | 40 | 0 | 72 | lod | 4,4 | 9,9 |
Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
Bourran2_2015_nPriLBD_A4 | Qrob_Chr02 | 2 | s_1CP5DI_1183 | s_1A63ZX_1277 | 24,87 | 24,63 | 26,18 | lod | 3.8 | 7 |
Bourran2_2015_nEpis_A4 | Qrob_Chr09 | 9 | v_15847_485 | v_8329_369 | 34,94 | 34,88 | 37,45 | lod | 3.1 | 7 |
Bourran1_2003_QTL1_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1AR8KI_1183 | s_1B0QB1_473 | 22 | 6 | 41 | lod | 4,2 | 11,5 |
Bourran1_2004_QTL3_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 46 | lod | 2,9 | 6,4 |
Bourran2_2015_nEpiBC_A4 | Qrob_Chr07 | 7 | s_1DP9TW_798 | v_8128_173 | 22,61 | 22,14 | 22,73 | lod | 3.1 | 8.5 |
Champenoux_2015_nEpis_A4 | Qrob_Chr02 | 2 | s_1BAGIZ_823 | s_1BN4CB_644 | 23,06 | 23,06 | 23,06 | lod | 4.9 | 11 |
Champenoux_2015_nP_A4 | Qrob_Chr02 | 2 | s_1BN4CB_644 | v_508_128 | 23,76 | 23,06 | 24,51 | lod | 2.8 | 6.2 |
Champenoux_2015_nPriLBD_A4 | Qrob_Chr02 | 2 | s_1CP5DI_1183 | s_1A63ZX_1277 | 25,35 | 24,63 | 26,18 | lod | 4.0 | 8.7 |
Champenoux_2015_nSecLBD_A4 | Qrob_Chr02 | 2 | s_1AN4ZM_1665 | v_8587_238 | 18,52 | 18,89 | 18,27 | lod | 3.2 | 7.4 |