Protein : Qrob_P0203830.2 Q. robur
Protein Identifier  ? Qrob_P0203830.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) 5.4.99.24 - 23S rRNA pseudouridine(955/2504/2580) synthase. Code Enzyme  EC:5.4.99.24
Gene Prediction Quality  validated Protein length 

Sequence

Length: 472  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0001522 pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
GO:0009451 RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
GO:0009982 pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100253686 1 471 + 471 Gaps:13 100.00 476 68.70 0.0 RNA pseudourine synthase 4 mitochondrial-like
blastp_kegg lcl|pop:POPTR_0009s09860g 1 469 + 469 Gaps:10 99.15 471 68.95 0.0 POPTRDRAFT_201901 hypothetical protein
blastp_kegg lcl|tcc:TCM_007143 15 471 + 457 Gaps:12 96.65 477 66.59 0.0 Ribosomal pseudouridine synthase putative
blastp_kegg lcl|pmum:103335154 22 471 + 450 Gaps:26 96.48 483 68.45 0.0 RNA pseudouridine synthase 4 mitochondrial
blastp_kegg lcl|pper:PRUPE_ppa004969mg 22 471 + 450 Gaps:28 96.47 481 68.53 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0811340 26 471 + 446 Gaps:19 83.77 536 68.15 0.0 ribosomal pseudouridine synthase putative (EC:3.2.1.17)
blastp_kegg lcl|cic:CICLE_v10028283mg 12 471 + 460 Gaps:22 95.95 494 65.19 0.0 hypothetical protein
blastp_kegg lcl|pxb:103933383 25 471 + 447 Gaps:32 94.86 486 65.73 0.0 RNA pseudouridine synthase 4 mitochondrial-like
blastp_kegg lcl|fve:101309281 31 471 + 441 Gaps:23 92.02 476 67.35 0.0 RNA pseudourine synthase 4 mitochondrial-like
blastp_kegg lcl|cmo:103495275 1 471 + 471 Gaps:14 100.00 471 60.30 0.0 RNA pseudouridine synthase 4 mitochondrial
blastp_pdb 1xpi_B 184 375 + 192 Gaps:23 73.16 231 39.05 6e-19 mol:protein length:231 Ribosomal large subunit pseudouridine synthas
blastp_pdb 1xpi_A 184 375 + 192 Gaps:23 73.16 231 39.05 6e-19 mol:protein length:231 Ribosomal large subunit pseudouridine synthas
blastp_pdb 1v9k_B 184 375 + 192 Gaps:23 74.12 228 38.46 1e-18 mol:protein length:228 Ribosomal large subunit pseudouridine synthas
blastp_pdb 1v9k_A 184 375 + 192 Gaps:23 74.12 228 38.46 1e-18 mol:protein length:228 Ribosomal large subunit pseudouridine synthas
blastp_pdb 2i82_D 184 403 + 220 Gaps:49 91.71 217 35.18 2e-17 mol:protein length:217 Ribosomal large subunit pseudouridine synthas
blastp_pdb 2i82_C 184 403 + 220 Gaps:49 91.71 217 35.18 2e-17 mol:protein length:217 Ribosomal large subunit pseudouridine synthas
blastp_pdb 2i82_B 184 403 + 220 Gaps:49 91.71 217 35.18 2e-17 mol:protein length:217 Ribosomal large subunit pseudouridine synthas
blastp_pdb 2i82_A 184 403 + 220 Gaps:49 91.71 217 35.18 2e-17 mol:protein length:217 Ribosomal large subunit pseudouridine synthas
blastp_pdb 1prz_A 185 375 + 191 Gaps:30 67.06 252 33.73 4e-10 mol:protein length:252 Ribosomal large subunit pseudouridine synthas
blastp_pdb 2ist_A 175 375 + 201 Gaps:34 56.31 325 33.33 5e-10 mol:protein length:325 Ribosomal large subunit pseudouridine synthas
blastp_uniprot_sprot sp|Q9LT72|PUS4_ARATH 5 471 + 467 Gaps:23 96.44 477 58.70 9e-173 RNA pseudouridine synthase 4 mitochondrial OS Arabidopsis thaliana GN At3g19440 PE 2 SV 1
blastp_uniprot_sprot sp|Q0J4D4|PUS3_ORYSJ 60 471 + 412 Gaps:29 88.21 475 41.77 5e-97 RNA pseudouridine synthase 3 mitochondrial OS Oryza sativa subsp. japonica GN Os08g0520100 PE 2 SV 1
blastp_uniprot_sprot sp|Q69K07|PUS4_ORYSJ 91 405 + 315 Gaps:9 68.30 448 51.96 3e-96 RNA pseudouridine synthase 4 mitochondrial OS Oryza sativa subsp. japonica GN Os09g0103500 PE 2 SV 1
blastp_uniprot_sprot sp|Q5XET6|PUS3_ARATH 60 471 + 412 Gaps:29 88.49 478 40.43 9e-96 RNA pseudouridine synthase 3 mitochondrial OS Arabidopsis thaliana GN At1g78910 PE 2 SV 1
blastp_uniprot_sprot sp|Q68XB2|RLUC_RICTY 95 375 + 281 Gaps:44 80.86 303 36.73 4e-35 Ribosomal large subunit pseudouridine synthase C OS Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN rluC PE 3 SV 1
blastp_uniprot_sprot sp|Q92IS6|RLUC_RICCN 89 375 + 287 Gaps:44 82.84 303 36.65 6e-35 Ribosomal large subunit pseudouridine synthase C OS Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN rluC PE 3 SV 1
blastp_uniprot_sprot sp|Q4UKQ3|RLUC_RICFE 89 375 + 287 Gaps:44 82.30 305 35.86 3e-33 Ribosomal large subunit pseudouridine synthase C OS Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN rluC PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZDR7|RLUC_RICPR 95 375 + 281 Gaps:44 80.86 303 35.51 3e-33 Ribosomal large subunit pseudouridine synthase C OS Rickettsia prowazekii (strain Madrid E) GN rluC PE 3 SV 1
blastp_uniprot_sprot sp|Q1RJX7|RLUC_RICBR 95 388 + 294 Gaps:53 84.05 301 36.76 7e-33 Ribosomal large subunit pseudouridine synthase C OS Rickettsia bellii (strain RML369-C) GN rluC PE 3 SV 1
blastp_uniprot_sprot sp|Q28C59|RUSD4_XENTR 174 430 + 257 Gaps:57 76.54 324 35.48 3e-27 RNA pseudouridylate synthase domain-containing protein 4 OS Xenopus tropicalis GN rpusd4 PE 2 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 278 470 193 PTHR10436 none none none
Pfam 192 361 170 PF00849 none RNA pseudouridylate synthase IPR006145
PANTHER 278 470 193 PTHR10436:SF94 none none none
SUPERFAMILY 419 469 51 SSF55120 none none IPR020103
SUPERFAMILY 176 389 214 SSF55120 none none IPR020103
PANTHER 92 262 171 PTHR10436 none none none
PANTHER 92 262 171 PTHR10436:SF94 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 82   Mitochondrion 4 0.058 0.605 NON-PLANT 82