Protein : Qrob_P0203510.2 Q. robur
Protein Identifier  ? Qrob_P0203510.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=28) K01213 - galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 380  
Kegg Orthology  K01213
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_002289 1 377 + 377 Gaps:23 98.27 405 54.02 4e-151 Polygalacturonase
blastp_kegg lcl|tcc:TCM_002294 1 377 + 377 Gaps:23 77.28 515 54.77 4e-150 Pectin lyase-like superfamily protein putative
blastp_kegg lcl|cmo:103498752 22 377 + 356 Gaps:6 82.71 428 60.17 2e-147 exopolygalacturonase-like
blastp_kegg lcl|pxb:103955042 3 377 + 375 Gaps:18 98.25 400 53.18 3e-147 exopolygalacturonase-like
blastp_kegg lcl|mdm:103442964 3 377 + 375 Gaps:18 98.25 400 53.18 4e-147 exopolygalacturonase-like
blastp_kegg lcl|tcc:TCM_043174 27 375 + 349 Gaps:3 87.50 400 59.71 2e-146 Pectin lyase-like superfamily protein putative
blastp_kegg lcl|mdm:103412274 1 377 + 377 Gaps:20 99.50 399 54.66 2e-146 exopolygalacturonase-like
blastp_kegg lcl|mdm:103453494 1 377 + 377 Gaps:20 99.50 399 54.41 1e-145 exopolygalacturonase-like
blastp_kegg lcl|pxb:103927064 1 377 + 377 Gaps:20 99.50 399 53.90 2e-145 exopolygalacturonase-like
blastp_kegg lcl|vvi:100259750 17 377 + 361 Gaps:4 91.35 393 57.10 2e-145 polygalacturonase-like
blastp_pdb 1nhc_F 82 362 + 281 Gaps:49 79.17 336 31.58 5e-17 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 82 362 + 281 Gaps:49 79.17 336 31.58 5e-17 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_D 82 362 + 281 Gaps:49 79.17 336 31.58 5e-17 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_C 82 362 + 281 Gaps:49 79.17 336 31.58 5e-17 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_B 82 362 + 281 Gaps:49 79.17 336 31.58 5e-17 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_A 82 362 + 281 Gaps:49 79.17 336 31.58 5e-17 mol:protein length:336 Polygalacturonase I
blastp_pdb 1ib4_B 96 362 + 267 Gaps:20 76.99 339 28.35 1e-15 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ib4_A 96 362 + 267 Gaps:20 76.99 339 28.35 1e-15 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ia5_A 96 362 + 267 Gaps:20 76.99 339 28.35 1e-15 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1hg8_A 96 330 + 235 Gaps:20 70.77 349 27.94 5e-15 mol:protein length:349 ENDOPOLYGALACTURONASE
blastp_uniprot_sprot sp|Q39786|PGLR_GOSHI 1 376 + 376 Gaps:24 97.30 407 51.26 5e-141 Polygalacturonase OS Gossypium hirsutum GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|Q6H9K0|PGLR2_PLAAC 21 372 + 352 Gaps:3 93.63 377 55.81 6e-141 Exopolygalacturonase (Fragment) OS Platanus acerifolia GN plaa2 PE 1 SV 1
blastp_uniprot_sprot sp|P24548|PGLR_OENOR 27 376 + 350 Gaps:3 96.96 362 56.41 2e-140 Exopolygalacturonase (Fragment) OS Oenothera organensis PE 2 SV 1
blastp_uniprot_sprot sp|Q39766|PGLR_GOSBA 1 376 + 376 Gaps:24 97.30 407 51.26 3e-140 Polygalacturonase OS Gossypium barbadense GN G9 PE 2 SV 1
blastp_uniprot_sprot sp|P35337|PGLR_BRANA 1 375 + 375 Gaps:15 97.23 397 48.70 1e-127 Polygalacturonase OS Brassica napus PE 2 SV 1
blastp_uniprot_sprot sp|Q05967|PGLR_TOBAC 18 377 + 360 Gaps:5 90.15 396 49.58 2e-126 Polygalacturonase OS Nicotiana tabacum GN PG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q40312|PGLR_MEDSA 27 375 + 349 Gaps:10 83.37 421 51.28 6e-120 Polygalacturonase OS Medicago sativa PE 2 SV 1
blastp_uniprot_sprot sp|P49063|PGLR2_ARATH 40 377 + 338 Gaps:1 76.35 444 48.08 4e-116 Exopolygalacturonase clone GBGA483 OS Arabidopsis thaliana GN At3g07850 PE 2 SV 2
blastp_uniprot_sprot sp|P26216|PGLR1_MAIZE 27 375 + 349 Gaps:2 85.61 410 45.30 2e-105 Exopolygalacturonase OS Zea mays GN PG1 PE 1 SV 1
blastp_uniprot_sprot sp|P35338|PGLR2_MAIZE 27 375 + 349 Gaps:2 85.61 410 45.01 3e-105 Exopolygalacturonase OS Zea mays GN PG9 PE 2 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 26 376 351 G3DSA:2.160.20.10 none none IPR012334
SUPERFAMILY 25 376 352 SSF51126 none none IPR011050
Phobius 1 4 4 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 17 21 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 21 21 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 22 379 358 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 41 365 325 PF00295 none Glycosyl hydrolases family 28 IPR000743
PANTHER 27 376 350 PTHR31375 none none none
PANTHER 27 376 350 PTHR31375:SF2 none none none
Phobius 5 16 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 26 25
SignalP_GRAM_NEGATIVE 1 23 22
SignalP_EUK 1 21 20

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Secretory pathway 1 0.961 0.035 NON-PLANT 21