Protein : Qrob_P0199390.2 Q. robur
Protein Identifier  ? Qrob_P0199390.2 Organism . Name  Quercus robur
Score  82.1 Score Type  egn
Protein Description  (M=2) K06634 - cyclin H Gene Prediction Quality  validated
Protein length 

Sequence

Length: 241  
Kegg Orthology  K06634
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

6 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity.
GO:0019901 protein kinase binding Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins.
GO:0070985 TFIIK complex A transcription factor complex that forms part of the holo TFIIH complex. In Saccharomyces/human, TFIIK contains Ccl1p/Cyclin H, Tfb3p/MAT1 and Kin2p/CDK7.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_026625 1 214 + 214 Gaps:67 65.02 426 57.04 2e-94 Cyclin H 1 isoform 2
blastp_kegg lcl|cic:CICLE_v10001764mg 1 214 + 214 Gaps:65 84.29 331 53.76 5e-94 hypothetical protein
blastp_kegg lcl|cit:102628605 1 214 + 214 Gaps:71 84.57 337 52.63 1e-91 cyclin-H1-1-like
blastp_kegg lcl|rcu:RCOM_1432330 1 214 + 214 Gaps:44 82.69 312 55.04 2e-89 cyclin h putative
blastp_kegg lcl|pxb:103965368 8 216 + 209 Gaps:73 85.62 313 49.63 2e-70 cyclin-H1-1
blastp_kegg lcl|aly:ARALYDRAFT_910823 1 212 + 212 Gaps:67 82.34 334 44.36 2e-64 CYCH_1
blastp_kegg lcl|ath:AT5G27620 1 212 + 212 Gaps:67 81.85 336 44.00 2e-63 CYCH 1 cyclin H 1
blastp_kegg lcl|sly:101248768 1 213 + 213 Gaps:64 84.71 327 42.60 2e-60 cyclin-H1-1-like
blastp_kegg lcl|sot:102603534 1 213 + 213 Gaps:64 84.71 327 42.60 3e-60 cyclin-H1-1-like
blastp_kegg lcl|pmum:103344576 1 214 + 214 none 64.09 337 81.48 7e-58 cyclin-H1-1
blastp_pdb 1kxu_A 102 232 + 131 Gaps:10 38.74 333 32.56 1e-09 mol:protein length:333 CYCLIN H
blastp_pdb 1jkw_A 102 232 + 131 Gaps:10 39.94 323 32.56 1e-09 mol:protein length:323 CYCLIN H
blastp_uniprot_sprot sp|Q8W5S1|CCH11_ARATH 1 212 + 212 Gaps:67 81.85 336 44.00 6e-65 Cyclin-H1-1 OS Arabidopsis thaliana GN CYCH1-1 PE 1 SV 1
blastp_uniprot_sprot sp|Q10D80|CCH11_ORYSJ 1 212 + 212 Gaps:4 64.55 330 59.15 2e-36 Cyclin-H1-1 OS Oryza sativa subsp. japonica GN CYCH1-1 PE 1 SV 1
blastp_uniprot_sprot sp|P51947|CCNH_XENLA 102 227 + 126 Gaps:9 38.70 323 32.80 2e-09 Cyclin-H OS Xenopus laevis GN ccnh PE 1 SV 1
blastp_uniprot_sprot sp|P51946|CCNH_HUMAN 102 232 + 131 Gaps:10 39.94 323 32.56 4e-09 Cyclin-H OS Homo sapiens GN CCNH PE 1 SV 1
blastp_uniprot_sprot sp|Q4R7U4|CCNH_MACFA 102 232 + 131 Gaps:10 39.94 323 32.56 4e-09 Cyclin-H OS Macaca fascicularis GN CCNH PE 2 SV 1
blastp_uniprot_sprot sp|Q3ZBL9|CCNH_BOVIN 102 232 + 131 Gaps:10 40.31 320 31.78 5e-09 Cyclin-H OS Bos taurus GN CCNH PE 2 SV 1
blastp_uniprot_sprot sp|Q9R1A0|CCNH_RAT 102 232 + 131 Gaps:10 39.94 323 32.56 2e-08 Cyclin-H OS Rattus norvegicus GN Ccnh PE 2 SV 2
blastp_uniprot_sprot sp|Q61458|CCNH_MOUSE 102 232 + 131 Gaps:10 39.94 323 31.78 4e-08 Cyclin-H OS Mus musculus GN Ccnh PE 2 SV 2
rpsblast_cdd gnl|CDD|129660 102 236 + 135 Gaps:5 42.62 305 30.00 3e-09 TIGR00569 ccl1 cyclin ccl1. All proteins in this family for which functions are known are cyclins that are components of TFIIH a complex that is involved in nucleotide excision repair and transcription initiation. This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis StanfordUniversity).
rpsblast_kog gnl|CDD|37707 3 236 + 234 Gaps:50 85.54 325 25.18 6e-30 KOG2496 KOG2496 KOG2496 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK cyclin H subunit [Cell cycle control cell division chromosome partitioning Transcription Replication recombination and repair].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 68 102 35 SSF47954 none none IPR013763
SUPERFAMILY 4 24 21 SSF47954 none none IPR013763
Gene3D 2 24 23 G3DSA:1.10.472.10 none none IPR013763
Gene3D 67 102 36 G3DSA:1.10.472.10 none none IPR013763
PANTHER 1 30 30 PTHR10026 none none IPR015429
PANTHER 73 233 161 PTHR10026:SF8 none none IPR027081
PANTHER 1 30 30 PTHR10026:SF8 none none IPR027081
Gene3D 112 213 102 G3DSA:1.10.472.10 none none IPR013763
PANTHER 73 233 161 PTHR10026 none none IPR015429
SUPERFAMILY 114 236 123 SSF47954 none none IPR013763

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting