Protein : Qrob_P0199170.2 Q. robur
Protein Identifier  ? Qrob_P0199170.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K10900 - werner syndrome ATP-dependent helicase [EC:3.6.4.12] Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 914  
Kegg Orthology  K10900
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0008026 ATP-dependent helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO:0006310 DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000740mg 1 911 + 911 Gaps:122 88.00 1017 66.82 0.0 hypothetical protein
blastp_kegg lcl|pmum:103344611 1 911 + 911 Gaps:122 98.90 905 66.82 0.0 ATP-dependent DNA helicase Q-like SIM
blastp_kegg lcl|mdm:103433925 1 910 + 910 Gaps:117 98.78 900 65.58 0.0 ATP-dependent DNA helicase Q-like SIM
blastp_kegg lcl|pxb:103965315 1 910 + 910 Gaps:119 98.78 902 65.54 0.0 ATP-dependent DNA helicase Q-like SIM
blastp_kegg lcl|vvi:100257897 1 856 + 856 Gaps:109 95.30 893 67.22 0.0 ATP-dependent DNA helicase Q-like SIM-like
blastp_kegg lcl|tcc:TCM_026643 1 913 + 913 Gaps:111 99.32 880 67.28 0.0 Lysyl-tRNA synthetase 1 putative isoform 1
blastp_kegg lcl|cic:CICLE_v10000234mg 1 913 + 913 Gaps:106 100.00 877 66.93 0.0 hypothetical protein
blastp_kegg lcl|cit:102608985 1 913 + 913 Gaps:106 100.00 877 66.93 0.0 ATP-dependent DNA helicase Q-like SIM-like
blastp_kegg lcl|fve:101312067 1 911 + 911 Gaps:108 98.88 893 64.78 0.0 ATP-dependent DNA helicase Q-like SIM-like
blastp_kegg lcl|rcu:RCOM_1433100 84 913 + 830 Gaps:111 99.25 803 67.38 0.0 DNA helicase putative
blastp_pdb 1oyy_A 146 651 + 506 Gaps:53 71.51 523 41.18 1e-39 mol:protein length:523 ATP-dependent DNA helicase
blastp_pdb 1oyw_A 146 651 + 506 Gaps:53 71.51 523 41.18 1e-39 mol:protein length:523 ATP-dependent DNA helicase
blastp_pdb 2wwy_B 147 670 + 524 Gaps:49 72.08 591 36.15 3e-37 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2wwy_A 147 670 + 524 Gaps:49 72.08 591 36.15 3e-37 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2v1x_B 147 670 + 524 Gaps:49 72.08 591 36.15 3e-37 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_pdb 2v1x_A 147 670 + 524 Gaps:49 72.08 591 36.15 3e-37 mol:protein length:591 ATP-DEPENDENT DNA HELICASE Q1
blastp_uniprot_sprot sp|Q9FT69|RQSIM_ARATH 6 854 + 849 Gaps:111 95.10 858 58.21 0.0 ATP-dependent DNA helicase Q-like SIM OS Arabidopsis thaliana GN RECQSIM PE 2 SV 1
blastp_uniprot_sprot sp|Q9DEY9|BLM_XENLA 149 674 + 526 Gaps:52 30.94 1364 39.34 6e-42 Bloom syndrome protein homolog OS Xenopus laevis GN blm PE 2 SV 1
blastp_uniprot_sprot sp|Q14191|WRN_HUMAN 152 649 + 498 Gaps:46 26.54 1432 41.05 2e-40 Werner syndrome ATP-dependent helicase OS Homo sapiens GN WRN PE 1 SV 2
blastp_uniprot_sprot sp|O93530|WRN_XENLA 152 760 + 609 Gaps:81 34.75 1436 36.07 6e-40 Werner syndrome ATP-dependent helicase homolog OS Xenopus laevis GN wrn PE 2 SV 1
blastp_uniprot_sprot sp|P71359|RECQ_HAEIN 152 651 + 500 Gaps:39 63.33 619 41.33 6e-40 ATP-dependent DNA helicase RecQ OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN recQ PE 3 SV 1
blastp_uniprot_sprot sp|Q9FT72|RQL3_ARATH 133 649 + 517 Gaps:49 55.96 713 36.84 9e-40 ATP-dependent DNA helicase Q-like 3 OS Arabidopsis thaliana GN RECQL3 PE 1 SV 1
blastp_uniprot_sprot sp|O09053|WRN_MOUSE 150 767 + 618 Gaps:68 35.47 1401 35.61 2e-39 Werner syndrome ATP-dependent helicase homolog OS Mus musculus GN Wrn PE 1 SV 3
blastp_uniprot_sprot sp|Q9I920|BLM_CHICK 149 675 + 527 Gaps:55 38.62 1142 38.55 4e-39 Bloom syndrome protein homolog (Fragment) OS Gallus gallus GN BLM PE 2 SV 1
blastp_uniprot_sprot sp|P15043|RECQ_ECOLI 146 651 + 506 Gaps:53 61.41 609 41.18 5e-39 ATP-dependent DNA helicase RecQ OS Escherichia coli (strain K12) GN recQ PE 1 SV 5
blastp_uniprot_sprot sp|O88700|BLM_MOUSE 149 649 + 501 Gaps:51 27.97 1416 39.90 7e-39 Bloom syndrome protein homolog OS Mus musculus GN Blm PE 1 SV 1
rpsblast_cdd gnl|CDD|129701 153 666 + 514 Gaps:58 91.28 470 39.63 2e-62 TIGR00614 recQ_fam ATP-dependent DNA helicase RecQ family. All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination recombinational repair and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford University).
rpsblast_cdd gnl|CDD|30860 150 745 + 596 Gaps:57 81.69 590 36.10 1e-54 COG0514 RecQ Superfamily II DNA helicase [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|130456 154 651 + 498 Gaps:46 62.44 591 43.09 5e-52 TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions as well as more distantly related bacterial helicases related to RecQ.
rpsblast_cdd gnl|CDD|182933 154 651 + 498 Gaps:65 64.25 607 39.74 2e-46 PRK11057 PRK11057 ATP-dependent DNA helicase RecQ Provisional.

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 494 578 85 SM00490 none helicase superfamily c-terminal domain IPR001650
SMART 160 365 206 SM00487 none DEAD-like helicases superfamily IPR014001
TIGRFAM 154 384 231 TIGR00614 none recQ_fam: ATP-dependent DNA helicase, RecQ family IPR004589
ProSiteProfiles 450 631 182 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
SUPERFAMILY 8 45 38 SSF46934 none none IPR009060
ProSiteProfiles 6 46 41 PS50030 none Ubiquitin-associated domain (UBA) profile. IPR015940
Gene3D 490 587 98 G3DSA:3.40.50.300 none none IPR027417
Gene3D 147 349 203 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 172 348 177 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
Pfam 534 578 45 PF00271 none Helicase conserved C-terminal domain IPR001650
PANTHER 486 748 263 PTHR13710:SF69 none none none
Gene3D 8 45 38 G3DSA:1.10.8.10 none none none
Gene3D 588 744 157 G3DSA:1.10.10.10 none none IPR011991
PANTHER 146 369 224 PTHR13710:SF69 none none none
PANTHER 146 369 224 PTHR13710 none none none
SUPERFAMILY 470 587 118 SSF52540 none none IPR027417
SUPERFAMILY 174 333 160 SSF52540 none none IPR027417
Pfam 167 333 167 PF00270 none DEAD/DEAH box helicase IPR011545
PANTHER 486 748 263 PTHR13710 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting