Protein : Qrob_P0196310.2 Q. robur
Protein Identifier  ? Qrob_P0196310.2 Organism . Name  Quercus robur
Score  81.0 Score Type  egn
Protein Description  (M=1) K02835 - peptide chain release factor RF-1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 460  
Kegg Orthology  K02835
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0006415 translational termination The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
GO:0016149 translation release factor activity, codon specific A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site.
GO:0003747 translation release factor activity Involved in catalyzing the release of a nascent polypeptide chain from a ribosome.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1343870 73 459 + 387 none 91.71 422 83.72 0.0 peptide chain release factor putative
blastp_kegg lcl|pper:PRUPE_ppa017649mg 91 458 + 368 none 94.85 388 85.87 0.0 hypothetical protein
blastp_kegg lcl|pmum:103339202 91 458 + 368 none 92.23 399 85.87 0.0 peptide chain release factor 1-like mitochondrial
blastp_kegg lcl|tcc:TCM_004929 72 459 + 388 none 91.94 422 84.28 0.0 Peptide chain release factor putative
blastp_kegg lcl|vvi:100252061 91 455 + 365 none 93.11 392 89.32 0.0 peptide chain release factor 1-like
blastp_kegg lcl|pop:POPTR_0014s10930g 89 457 + 369 none 87.03 424 85.91 0.0 POPTRDRAFT_774637 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10020151mg 37 459 + 423 Gaps:8 93.26 445 79.52 0.0 hypothetical protein
blastp_kegg lcl|cit:102625585 37 459 + 423 Gaps:8 98.34 422 79.52 0.0 peptide chain release factor 1-like mitochondrial-like
blastp_kegg lcl|gmx:100800412 72 459 + 388 none 93.49 415 79.90 0.0 peptide chain release factor 1-like mitochondrial-like
blastp_kegg lcl|cam:101514239 91 458 + 368 none 89.76 410 82.88 0.0 peptide chain release factor 1-like
blastp_pdb 2b3t_B 170 456 + 287 Gaps:2 79.72 360 54.36 3e-102 mol:protein length:360 Peptide chain release factor 1
blastp_pdb 2fvo_A 153 444 + 292 Gaps:5 87.39 333 48.11 7e-91 mol:protein length:333 Peptide chain release factor 1
blastp_pdb 1rq0_C 153 444 + 292 Gaps:5 85.09 342 48.11 2e-90 mol:protein length:342 Peptide chain release factor 1
blastp_pdb 1rq0_B 153 444 + 292 Gaps:5 85.09 342 48.11 2e-90 mol:protein length:342 Peptide chain release factor 1
blastp_pdb 1rq0_A 153 444 + 292 Gaps:5 85.09 342 48.11 2e-90 mol:protein length:342 Peptide chain release factor 1
blastp_pdb 3ms0_V 170 443 + 274 Gaps:1 77.12 354 49.82 3e-89 mol:protein length:354 Peptide chain release factor 1
blastp_pdb 3mr8_V 170 443 + 274 Gaps:1 77.12 354 49.82 3e-89 mol:protein length:354 Peptide chain release factor 1
blastp_pdb 3d5c_X 170 443 + 274 Gaps:1 77.12 354 49.82 3e-89 mol:protein length:354 Peptide chain release factor 1
blastp_pdb 3d5a_X 170 443 + 274 Gaps:1 77.12 354 49.82 3e-89 mol:protein length:354 Peptide chain release factor 1
blastp_pdb 2b64_Y 170 443 + 274 Gaps:1 77.12 354 49.82 3e-89 mol:protein length:354 Peptide chain release factor 1
blastp_uniprot_sprot sp|A7HTY3|RF1_PARL1 101 456 + 356 Gaps:5 98.87 355 51.28 1e-120 Peptide chain release factor 1 OS Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN prfA PE 3 SV 1
blastp_uniprot_sprot sp|A8GXI1|RF1_RICB8 129 448 + 320 Gaps:1 89.36 357 54.86 1e-120 Peptide chain release factor 1 OS Rickettsia bellii (strain OSU 85-389) GN prfA PE 3 SV 1
blastp_uniprot_sprot sp|A8GSC7|RF1_RICRS 129 448 + 320 none 90.14 355 53.44 6e-120 Peptide chain release factor 1 OS Rickettsia rickettsii (strain Sheila Smith) GN prfA PE 3 SV 1
blastp_uniprot_sprot sp|B0BXT9|RF1_RICRO 129 448 + 320 none 90.14 355 53.44 6e-120 Peptide chain release factor 1 OS Rickettsia rickettsii (strain Iowa) GN prfA PE 3 SV 1
blastp_uniprot_sprot sp|Q2RWE1|RF1_RHORT 102 456 + 355 Gaps:4 99.15 354 51.28 6e-120 Peptide chain release factor 1 OS Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN prfA PE 3 SV 1
blastp_uniprot_sprot sp|Q1RJT5|RF1_RICBR 129 448 + 320 Gaps:1 89.36 357 54.55 7e-120 Peptide chain release factor 1 OS Rickettsia bellii (strain RML369-C) GN prfA PE 3 SV 1
blastp_uniprot_sprot sp|B3CL87|RF1_WOLPP 118 450 + 333 Gaps:7 92.01 363 52.69 9e-120 Peptide chain release factor 1 OS Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN prfA PE 3 SV 1
blastp_uniprot_sprot sp|A8GNQ4|RF1_RICAH 129 448 + 320 none 90.14 355 54.06 3e-119 Peptide chain release factor 1 OS Rickettsia akari (strain Hartford) GN prfA PE 3 SV 1
blastp_uniprot_sprot sp|A8EYR1|RF1_RICCK 129 453 + 325 none 91.55 355 52.92 3e-119 Peptide chain release factor 1 OS Rickettsia canadensis (strain McKiel) GN prfA PE 3 SV 1
blastp_uniprot_sprot sp|Q73IC2|RF1_WOLPM 118 456 + 339 Gaps:7 94.71 359 51.76 6e-119 Peptide chain release factor 1 OS Wolbachia pipientis wMel GN prfA PE 3 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 104 456 353 TIGR00019 none prfA: peptide chain release factor 1 IPR004373
PANTHER 97 453 357 PTHR11075 none none none
Pfam 308 419 112 PF00472 none RF-1 domain IPR000352
Gene3D 109 187 79 G3DSA:1.20.58.410 none none none
PANTHER 97 453 357 PTHR11075:SF9 none none none
Gene3D 309 382 74 G3DSA:3.30.160.20 none none IPR014720
SMART 162 277 116 SM00937 none none IPR005139
Hamap 102 456 355 MF_00093 none Peptide chain release factor 1 [prfA]. IPR004373
Pfam 165 277 113 PF03462 none PCRF domain IPR005139
SUPERFAMILY 126 447 322 SSF75620 none none none
Coils 174 195 22 Coil none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 47   Mitochondrion 2 0.015 0.886 NON-PLANT 47