Protein : Qrob_P0194840.2 Q. robur
Protein Identifier  ? Qrob_P0194840.2 Organism . Name  Quercus robur
Score  47.0 Score Type  egn
Protein Description  (M=1) PF00641//PF03514 - Zn-finger in Ran binding protein and others // GRAS domain family Gene Prediction Quality  validated
Protein length 

Sequence

Length: 302  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0000989 transcription factor binding transcription factor activity Interacting selectively and non-covalently with a specific transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100251385 116 297 + 182 Gaps:6 88.84 242 74.42 4e-84 ranBP2-type zinc finger protein At1g67325-like
blastp_kegg lcl|gmx:100806059 119 296 + 178 Gaps:5 72.47 247 65.36 6e-73 ranBP2-type zinc finger protein At1g67325-like
blastp_kegg lcl|cam:101491332 119 301 + 183 Gaps:4 74.69 245 63.39 2e-72 ranBP2-type zinc finger protein At1g67325-like
blastp_kegg lcl|gmx:100775590 119 296 + 178 Gaps:7 73.28 247 61.88 7e-69 ranBP2-type zinc finger protein At1g67325-like
blastp_kegg lcl|pvu:PHAVU_008G046200g 119 296 + 178 Gaps:1 93.06 245 58.77 3e-68 hypothetical protein
blastp_kegg lcl|pop:POPTR_0008s13090g 1 115 + 115 none 19.17 600 86.09 4e-60 POPTRDRAFT_719856 hypothetical protein
blastp_kegg lcl|pda:103704735 121 297 + 177 Gaps:14 93.39 242 62.39 9e-60 ranBP2-type zinc finger protein At1g67325-like
blastp_kegg lcl|rcu:RCOM_0629510 1 115 + 115 none 18.88 609 86.09 2e-59 DELLA protein GAIP-B putative
blastp_kegg lcl|pda:103724187 122 299 + 178 Gaps:23 90.04 271 59.02 2e-59 ranBP2-type zinc finger protein At1g67325-like
blastp_kegg lcl|pper:PRUPE_ppa005944mg 1 115 + 115 none 26.38 436 83.48 6e-59 hypothetical protein
blastp_uniprot_sprot sp|Q6EI06|GAIP_CUCMA 1 115 + 115 none 19.86 579 80.00 2e-55 DELLA protein GAIP OS Cucurbita maxima GN GAIP PE 2 SV 1
blastp_uniprot_sprot sp|Q6EI05|GAIPB_CUCMA 1 115 + 115 none 19.59 587 78.26 3e-54 DELLA protein GAIP-B OS Cucurbita maxima GN GAIPB PE 2 SV 1
blastp_uniprot_sprot sp|Q8S4W7|GAI1_VITVI 1 115 + 115 Gaps:4 20.17 590 77.31 2e-53 DELLA protein GAI1 OS Vitis vinifera GN GAI1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LQT8|GAI_ARATH 1 115 + 115 none 21.58 533 77.39 2e-53 DELLA protein GAI OS Arabidopsis thaliana GN GAI PE 1 SV 1
blastp_uniprot_sprot sp|Q84TQ7|GAI_GOSHI 1 115 + 115 Gaps:3 21.97 537 76.27 7e-52 DELLA protein GAI OS Gossypium hirsutum GN GAI PE 2 SV 1
blastp_uniprot_sprot sp|Q5BN23|RGA1_BRACM 1 115 + 115 none 20.07 573 77.39 7e-52 DELLA protein RGA1 OS Brassica campestris GN RGA1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5BN22|RGA2_BRACM 1 115 + 115 none 19.86 579 77.39 1e-51 DELLA protein RGA2 OS Brassica campestris GN RGA2 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SLH3|RGA_ARATH 1 115 + 115 none 19.59 587 74.78 1e-49 DELLA protein RGA OS Arabidopsis thaliana GN RGA PE 1 SV 1
blastp_uniprot_sprot sp|Q9ST48|DWRF8_MAIZE 1 115 + 115 Gaps:14 20.48 630 66.67 7e-47 DELLA protein DWARF8 OS Zea mays GN D8 PE 1 SV 1
blastp_uniprot_sprot sp|Q7Y1B6|GAI_SOLLC 1 115 + 115 Gaps:16 22.28 588 66.41 5e-46 DELLA protein GAI OS Solanum lycopersicum GN GAI PE 2 SV 1
rpsblast_cdd gnl|CDD|202673 1 115 + 115 Gaps:4 31.45 372 48.72 1e-39 pfam03514 GRAS GRAS family transcription factor. Sequence analysis of the products of the GRAS (GAI RGA SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect loss of a ground tissue layer in the root. The PAT1 protein is involved in phytochrome A signal transduction.
rpsblast_kog gnl|CDD|39399 173 289 + 117 Gaps:11 38.57 280 25.93 3e-07 KOG4198 KOG4198 KOG4198 RNA-binding Ran Zn-finger protein and related proteins [General function prediction only].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 226 256 31 PF00641 none Zn-finger in Ran binding protein and others IPR001876
Pfam 268 297 30 PF00641 none Zn-finger in Ran binding protein and others IPR001876
Pfam 1 115 115 PF03514 none GRAS domain family IPR005202
ProSiteProfiles 1 118 118 PS50985 none GRAS family profile. IPR005202
Gene3D 261 298 38 G3DSA:4.10.1060.10 none none IPR001876
Gene3D 219 256 38 G3DSA:4.10.1060.10 none none IPR001876
PANTHER 1 115 115 PTHR31636:SF7 none none IPR030006
SUPERFAMILY 219 257 39 SSF90209 none none none
SMART 227 253 27 SM00547 none Zinc finger domain IPR001876
SMART 269 295 27 SM00547 none Zinc finger domain IPR001876
PANTHER 1 115 115 PTHR31636 none none none
SUPERFAMILY 259 298 40 SSF90209 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting