Protein : Qrob_P0189110.2 Q. robur
Protein Identifier  ? Qrob_P0189110.2 Organism . Name  Quercus robur
Score  96.0 Score Type  egn
Protein Description  (M=1) K12195 - charged multivesicular body protein 6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 201  
Kegg Orthology  K12195
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0007034 vacuolar transport The directed movement of substances into, out of or within a vacuole.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100775459 1 189 + 189 Gaps:38 96.28 215 73.91 2e-89 vacuolar protein sorting-associated protein 20 homolog 2-like
blastp_kegg lcl|sly:101250100 1 183 + 183 Gaps:31 91.63 227 71.15 2e-89 vacuolar protein sorting-associated protein 20 homolog 2-like
blastp_kegg lcl|gmx:100820408 1 189 + 189 Gaps:38 96.28 215 73.43 5e-89 vacuolar protein sorting-associated protein 20 homolog 2-like
blastp_kegg lcl|sot:102602334 1 186 + 186 Gaps:32 93.39 227 70.28 3e-88 vacuolar protein sorting-associated protein 20 homolog 2-like
blastp_kegg lcl|pvu:PHAVU_009G154500g 1 189 + 189 Gaps:38 96.28 215 71.50 2e-87 hypothetical protein
blastp_kegg lcl|pop:POPTR_0007s04580g 1 186 + 186 Gaps:36 92.79 222 72.33 1e-86 POPTRDRAFT_802672 HISTIDINOL DEHYDROGENASE family protein
blastp_kegg lcl|cam:101495680 1 189 + 189 Gaps:38 96.28 215 71.01 2e-86 vacuolar protein sorting-associated protein 20 homolog 2-like
blastp_kegg lcl|ath:AT5G09260 1 191 + 191 Gaps:31 97.22 216 70.48 1e-85 VPS20.2 vacuolar protein sorting-associated protein 20-2
blastp_kegg lcl|pop:POPTR_0005s06870g 1 191 + 191 Gaps:27 97.30 222 68.98 2e-85 POPTRDRAFT_558455 HISTIDINOL DEHYDROGENASE family protein
blastp_kegg lcl|mtr:MTR_3g096680 1 191 + 191 Gaps:30 97.24 217 68.25 2e-85 Vacuolar protein sorting-associated protein-like protein
blastp_uniprot_sprot sp|Q9FY89|VP202_ARATH 1 191 + 191 Gaps:31 97.22 216 70.48 5e-87 Vacuolar protein sorting-associated protein 20 homolog 2 OS Arabidopsis thaliana GN VPS20.2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8GXN6|VP201_ARATH 1 191 + 191 Gaps:28 97.26 219 64.32 1e-79 Vacuolar protein sorting-associated protein 20 homolog 1 OS Arabidopsis thaliana GN VPS20.1 PE 1 SV 1
blastp_uniprot_sprot sp|Q54KZ4|CHMP6_DICDI 1 136 + 136 Gaps:12 63.30 218 47.10 2e-26 Charged multivesicular body protein 6 OS Dictyostelium discoideum GN chmp6 PE 3 SV 2
blastp_uniprot_sprot sp|Q5ZL55|CHMP6_CHICK 1 135 + 135 Gaps:2 68.50 200 37.96 1e-24 Charged multivesicular body protein 6 OS Gallus gallus GN CHMP6 PE 2 SV 3
blastp_uniprot_sprot sp|P0C0A3|CHMP6_MOUSE 1 156 + 156 Gaps:28 92.00 200 33.70 1e-23 Charged multivesicular body protein 6 OS Mus musculus GN Chmp6 PE 2 SV 2
blastp_uniprot_sprot sp|Q96FZ7|CHMP6_HUMAN 1 135 + 135 Gaps:2 68.16 201 38.69 2e-23 Charged multivesicular body protein 6 OS Homo sapiens GN CHMP6 PE 1 SV 3
blastp_uniprot_sprot sp|Q5R861|CHMP6_PONAB 1 135 + 135 Gaps:2 68.16 201 38.69 2e-23 Charged multivesicular body protein 6 OS Pongo abelii GN CHMP6 PE 2 SV 3
blastp_uniprot_sprot sp|Q503V0|CHMP6_DANRE 1 135 + 135 Gaps:2 66.50 206 43.07 6e-21 Charged multivesicular body protein 6 OS Danio rerio GN chmp6 PE 2 SV 3
blastp_uniprot_sprot sp|Q6GMA4|CHM6A_XENLA 1 135 + 135 Gaps:2 68.50 200 40.15 1e-20 Charged multivesicular body protein 6-A OS Xenopus laevis GN chmp6-a PE 2 SV 3
blastp_uniprot_sprot sp|Q6NU11|CHM6B_XENLA 1 135 + 135 Gaps:2 68.50 200 40.15 1e-19 Charged multivesicular body protein 6-B OS Xenopus laevis GN chmp6-b PE 2 SV 3
rpsblast_cdd gnl|CDD|146145 16 138 + 123 none 72.78 169 33.33 4e-23 pfam03357 Snf7 Snf7. This family of proteins are involved in protein sorting and transport from the endosome to the vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes play an important role in the degradation of both lipids and cellular proteins. In order to perform this degradative function vacuoles/lysosomes contain numerous hydrolases which have been transported in the form of inactive precursors via the biosynthetic pathway and are proteolytically activated upon delivery to the vacuole/lysosome. The delivery of transmembrane proteins such as activated cell surface receptors to the lumen of the vacuole/lysosome either for degradation/downregulation or in the case of hydrolases for proper localisation requires the formation of multivesicular bodies (MVBs). These late endosomal structures are formed by invaginating and budding of the limiting membrane into the lumen of the compartment. During this process a subset of the endosomal membrane proteins is sorted into the forming vesicles. Mature MVBs fuse with the vacuole/lysosome thereby releasing cargo containing vesicles into its hydrolytic lumen for degradation. Endosomal proteins that are not sorted into the intralumenal MVB vesicles are either recycled back to the plasma membrane or Golgi complex or remain in the limiting membrane of the MVB and are thereby transported to the limiting membrane of the vacuole/lysosome as a consequence of fusion. Therefore the MVB sorting pathway plays a critical role in the decision between recycling and degradation of membrane proteins. A few archaeal sequences are also present within this family.
rpsblast_kog gnl|CDD|38121 1 136 + 136 none 65.07 209 59.56 4e-39 KOG2910 KOG2910 KOG2910 Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only].
rpsblast_kog gnl|CDD|38122 10 163 + 154 Gaps:2 35.08 439 29.22 1e-10 KOG2911 KOG2911 KOG2911 Uncharacterized conserved protein [Function unknown].
rpsblast_kog gnl|CDD|36869 7 133 + 127 none 57.47 221 30.71 4e-10 KOG1656 KOG1656 KOG1656 Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking secretion and vesicular transport].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 17 138 122 PF03357 none Snf7 IPR005024
PANTHER 1 136 136 PTHR22761 none none none
Coils 14 49 36 Coil none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting