Protein : Qrob_P0187810.2 Q. robur
Protein Identifier  ? Qrob_P0187810.2 Organism . Name  Quercus robur
Score  4.0 Score Type  egn
Protein Description  (M=1) PTHR11141:SF2 - PROTEIN TRANSPORT PROTEIN SEC23 RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 768  
Kegg Orthology  K14006
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0006888 ER to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO:0030127 COPII vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0659690 1 767 + 767 Gaps:12 100.00 761 86.07 0.0 protein transport protein sec23 putative
blastp_kegg lcl|pxb:103951649 1 767 + 767 Gaps:10 100.00 761 85.94 0.0 protein transport protein SEC23-like
blastp_kegg lcl|cmo:103498996 1 767 + 767 Gaps:10 100.00 761 85.68 0.0 protein transport protein SEC23
blastp_kegg lcl|tcc:TCM_045610 1 767 + 767 Gaps:10 76.25 998 86.33 0.0 Sec23/Sec24 protein transport family protein isoform 1
blastp_kegg lcl|csv:101225764 1 767 + 767 Gaps:10 100.00 761 85.15 0.0 protein transport protein SEC23-like
blastp_kegg lcl|csv:101203686 1 767 + 767 Gaps:10 100.00 761 85.15 0.0 protein transport protein SEC23-like
blastp_kegg lcl|mdm:103407888 1 767 + 767 Gaps:10 100.00 761 85.28 0.0 protein transport protein SEC23
blastp_kegg lcl|pxb:103965016 1 767 + 767 Gaps:10 100.00 761 85.28 0.0 protein transport protein SEC23-like
blastp_kegg lcl|pmum:103331381 1 767 + 767 Gaps:10 100.00 761 85.02 0.0 protein transport protein SEC23
blastp_kegg lcl|pper:PRUPE_ppa001813mg 1 767 + 767 Gaps:10 100.00 761 84.89 0.0 hypothetical protein
blastp_pdb 3egx_A 1 766 + 766 Gaps:35 99.61 764 48.23 0.0 mol:protein length:764 Protein transport protein Sec23A
blastp_pdb 3egd_A 1 766 + 766 Gaps:35 99.61 764 48.23 0.0 mol:protein length:764 Protein transport protein Sec23A
blastp_pdb 3eg9_A 1 766 + 766 Gaps:35 99.61 764 48.23 0.0 mol:protein length:764 Protein transport protein Sec23A
blastp_pdb 2nut_A 1 766 + 766 Gaps:35 98.96 769 48.23 0.0 mol:protein length:769 Protein transport protein Sec23A
blastp_pdb 2nup_A 1 766 + 766 Gaps:35 98.96 769 48.23 0.0 mol:protein length:769 Protein transport protein Sec23A
blastp_pdb 3efo_A 1 766 + 766 Gaps:35 99.48 765 48.09 0.0 mol:protein length:765 Protein transport protein Sec23A
blastp_pdb 2qtv_A 2 766 + 765 Gaps:35 98.96 772 43.06 0.0 mol:protein length:772 Protein transport protein SEC23
blastp_pdb 1m2v_A 3 766 + 764 Gaps:35 99.35 768 43.12 0.0 mol:protein length:768 protein transport protein SEC23
blastp_pdb 1m2o_C 3 766 + 764 Gaps:35 99.35 768 43.12 0.0 mol:protein length:768 protein transport protein SEC23
blastp_pdb 1m2o_A 3 766 + 764 Gaps:35 99.35 768 43.12 0.0 mol:protein length:768 protein transport protein SEC23
blastp_uniprot_sprot sp|Q4PE39|SEC23_USTMA 6 766 + 761 Gaps:45 98.84 773 48.43 0.0 Protein transport protein SEC23 OS Ustilago maydis (strain 521 / FGSC 9021) GN SEC23 PE 3 SV 1
blastp_uniprot_sprot sp|A4R1J7|SEC23_MAGO7 3 766 + 764 Gaps:24 98.44 770 48.55 0.0 Protein transport protein SEC23 OS Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN SEC23 PE 3 SV 1
blastp_uniprot_sprot sp|Q9C284|SEC23_NEUCR 6 766 + 761 Gaps:21 98.06 775 47.76 0.0 Protein transport protein sec23 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN sec23-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q1DY01|SEC23_COCIM 3 766 + 764 Gaps:18 98.45 772 48.16 0.0 Protein transport protein SEC23 OS Coccidioides immitis (strain RS) GN SEC23 PE 3 SV 1
blastp_uniprot_sprot sp|P0CR38|SEC23_CRYNJ 4 766 + 763 Gaps:33 99.08 763 48.81 0.0 Protein transport protein SEC23 OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN SEC23 PE 3 SV 1
blastp_uniprot_sprot sp|P0CR39|SEC23_CRYNB 4 766 + 763 Gaps:33 99.08 763 48.81 0.0 Protein transport protein SEC23 OS Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN SEC23 PE 3 SV 1
blastp_uniprot_sprot sp|Q7SZE5|SC23A_DANRE 1 766 + 766 Gaps:35 99.48 765 48.36 0.0 Protein transport protein Sec23A OS Danio rerio GN sec23a PE 2 SV 1
blastp_uniprot_sprot sp|Q15436|SC23A_HUMAN 1 766 + 766 Gaps:35 99.48 765 48.23 0.0 Protein transport protein Sec23A OS Homo sapiens GN SEC23A PE 1 SV 2
blastp_uniprot_sprot sp|Q0US25|SEC23_PHANO 6 766 + 761 Gaps:37 97.94 776 48.29 0.0 Protein transport protein SEC23 OS Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN SEC23 PE 3 SV 2
blastp_uniprot_sprot sp|Q5R9P3|SC23A_PONAB 1 766 + 766 Gaps:35 99.48 765 48.23 0.0 Protein transport protein Sec23A OS Pongo abelii GN SEC23A PE 2 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 639 725 87 PF00626 none Gelsolin repeat IPR007123
Pfam 404 507 104 PF08033 "Reactome:REACT_11123" Sec23/Sec24 beta-sandwich domain IPR012990
Pfam 126 392 267 PF04811 "Reactome:REACT_11123" Sec23/Sec24 trunk domain IPR006896
SUPERFAMILY 4 62 59 SSF81995 none none none
SUPERFAMILY 410 509 100 SSF81995 none none none
PANTHER 1 767 767 PTHR11141 none none none
SUPERFAMILY 628 767 140 SSF82754 none none none
PANTHER 1 767 767 PTHR11141:SF2 none none none
Pfam 54 92 39 PF04810 "Reactome:REACT_11123" Sec23/Sec24 zinc finger IPR006895
Gene3D 403 507 105 G3DSA:2.60.40.1670 none none none
Gene3D 127 394 268 G3DSA:3.40.50.410 none none IPR002035
Pfam 526 626 101 PF04815 "Reactome:REACT_11123" Sec23/Sec24 helical domain IPR006900
SUPERFAMILY 525 627 103 SSF81811 "Reactome:REACT_11123" none IPR006900
SUPERFAMILY 45 117 73 SSF82919 "Reactome:REACT_11123" none IPR006895
Gene3D 627 738 112 G3DSA:3.40.20.10 none none IPR029006
SUPERFAMILY 127 393 267 SSF53300 none none IPR002035

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting