Protein : Qrob_P0187470.2 Q. robur
Protein Identifier  ? Qrob_P0187470.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR22958 - RELATED TO MULTIFUNCTIONAL CYCLIN-DEPENDENT KINASE-RELATED Code Enzyme  EC:3.1.4.46
Gene Prediction Quality  validated Protein length 

Sequence

Length: 378  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006629 lipid metabolic process The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
GO:0008081 phosphoric diester hydrolase activity Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa006994mg 1 377 + 377 Gaps:9 100.00 386 78.50 0.0 hypothetical protein
blastp_kegg lcl|pxb:103938517 1 377 + 377 Gaps:8 100.00 385 79.22 0.0 glycerophosphodiester phosphodiesterase gde1-like
blastp_kegg lcl|pxb:103936100 1 377 + 377 none 100.00 377 78.78 0.0 glycerophosphodiester phosphodiesterase GDE1-like
blastp_kegg lcl|pxb:103966565 1 377 + 377 none 100.00 377 78.78 0.0 glycerophosphodiester phosphodiesterase GDE1-like
blastp_kegg lcl|pxb:103943629 1 377 + 377 none 100.00 377 78.78 0.0 glycerophosphodiester phosphodiesterase GDE1-like
blastp_kegg lcl|pmum:103330293 1 377 + 377 Gaps:9 100.00 386 78.50 0.0 glycerophosphodiester phosphodiesterase gde1-like
blastp_kegg lcl|mdm:103411114 1 377 + 377 Gaps:8 100.00 385 77.40 0.0 glycerophosphodiester phosphodiesterase gde1-like
blastp_kegg lcl|mdm:103442107 1 377 + 377 Gaps:8 100.00 385 77.40 0.0 glycerophosphodiester phosphodiesterase gde1-like
blastp_kegg lcl|mdm:103404157 1 377 + 377 none 100.00 377 77.72 0.0 glycerophosphodiester phosphodiesterase GDE1-like
blastp_kegg lcl|tcc:TCM_017281 1 376 + 376 Gaps:3 99.74 380 77.31 0.0 Senescence-related gene 3 isoform 1
blastp_pdb 3qvq_D 38 338 + 301 Gaps:66 98.81 252 30.52 1e-07 mol:protein length:252 Phosphodiesterase Olei02445
blastp_pdb 3qvq_C 38 338 + 301 Gaps:66 98.81 252 30.52 1e-07 mol:protein length:252 Phosphodiesterase Olei02445
blastp_pdb 3qvq_B 38 338 + 301 Gaps:66 98.81 252 30.52 1e-07 mol:protein length:252 Phosphodiesterase Olei02445
blastp_pdb 3qvq_A 38 338 + 301 Gaps:66 98.81 252 30.52 1e-07 mol:protein length:252 Phosphodiesterase Olei02445
blastp_pdb 2pz0_B 45 247 + 203 Gaps:39 65.87 252 34.94 9e-07 mol:protein length:252 Glycerophosphoryl diester phosphodiesterase
blastp_pdb 2pz0_A 45 247 + 203 Gaps:39 65.87 252 34.94 9e-07 mol:protein length:252 Glycerophosphoryl diester phosphodiesterase
blastp_uniprot_sprot sp|Q9C104|GDE1_SCHPO 48 344 + 297 Gaps:49 30.48 1076 34.15 4e-37 Glycerophosphodiester phosphodiesterase gde1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN gde1 PE 1 SV 1
blastp_uniprot_sprot sp|Q02979|GDE1_YEAST 48 335 + 288 Gaps:73 28.21 1223 29.57 8e-34 Glycerophosphodiester phosphodiesterase GDE1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN GDE1 PE 1 SV 1
blastp_uniprot_sprot sp|Q74ZH9|GDE1_ASHGO 48 335 + 288 Gaps:65 25.66 1321 28.61 2e-33 Glycerophosphodiester phosphodiesterase GDE1 OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN GDE1 PE 3 SV 2
blastp_uniprot_sprot sp|Q10003|GPC1A_CAEEL 47 329 + 283 Gaps:38 38.32 796 30.16 2e-24 Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog T05H10.7 OS Caenorhabditis elegans GN T05H10.7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9NPB8|GPCP1_HUMAN 39 327 + 289 Gaps:35 44.94 672 27.48 7e-23 Glycerophosphocholine phosphodiesterase GPCPD1 OS Homo sapiens GN GPCPD1 PE 1 SV 2
blastp_uniprot_sprot sp|Q80VJ4|GPCP1_RAT 39 327 + 289 Gaps:39 44.94 672 27.81 8e-23 Glycerophosphocholine phosphodiesterase GPCPD1 OS Rattus norvegicus GN Gpcpd1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8C0L9|GPCP1_MOUSE 39 327 + 289 Gaps:39 44.74 675 28.15 4e-22 Glycerophosphocholine phosphodiesterase GPCPD1 OS Mus musculus GN Gpcpd1 PE 1 SV 1
blastp_uniprot_sprot sp|Q21407|GPC1B_CAEEL 31 329 + 299 Gaps:48 46.52 690 27.41 1e-19 Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog K10B3.6 OS Caenorhabditis elegans GN K10B3.6 PE 3 SV 2
blastp_uniprot_sprot sp|O07592|YHDW_BACSU 71 325 + 255 Gaps:68 88.48 243 31.63 8e-07 Putative glycerophosphoryl diester phosphodiesterase YhdW OS Bacillus subtilis (strain 168) GN yhdW PE 3 SV 1
rpsblast_cdd gnl|CDD|176547 47 327 + 281 Gaps:1 100.00 282 52.13 1e-109 cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
rpsblast_cdd gnl|CDD|176514 47 325 + 279 Gaps:18 99.32 293 40.55 3e-84 cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues with highest expression in spinal chord. Although its biological function remains unclear mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
rpsblast_cdd gnl|CDD|176548 48 334 + 287 Gaps:26 98.25 286 35.59 6e-47 cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1) YPL110cp (Gde1p) displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE EC 3.1.4.46) which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC not glycerophosphoinositol (GPI) to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture including not only C-terminal GDPD but also an SPX N-terminal domain along with several ankyrin repeats which implies that YPL110cp may mediate protein-protein interactions in a variety of proteins and play a role in maintaining cellular phosphate levels. Members in this family are distantly related to S. cerevisiae YPL206cp which selectively catalyzes the cleavage of phosphatidylglycerol (PG) not glycerophosphoinositol (GPI) or glycerophosphocholine (GPC) to diacylglycerol (DAG) and glycerophosphate and has been characterized as a PG-specific phospholipase C.
rpsblast_cdd gnl|CDD|176549 47 325 + 279 Gaps:55 99.31 290 31.25 5e-39 cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues with highest expression in the spinal chord. Although its biological function remains unclear mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain all members in this subfamily have a starch binding domain (CBM20) in the N-terminus which suggests these proteins may play a distinct role in glycerol metabolism.
rpsblast_cdd gnl|CDD|202508 51 325 + 275 Gaps:49 98.32 238 32.48 2e-33 pfam03009 GDPD Glycerophosphoryl diester phosphodiesterase family. E. coli has two sequence related isozymes of glycerophosphoryl diester phosphodiesterase (GDPD) - periplasmic and cytosolic. This family also includes agrocinopine synthase the similarity to GDPD has been noted. This family appears to have weak but not significant matches to mammalian phospholipase C pfam00388 which suggests that this family may adopt a TIM barrel fold.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 44 332 289 SSF51695 none none IPR017946
Gene3D 44 331 288 G3DSA:3.20.20.190 none none IPR017946
PANTHER 46 350 305 PTHR22958 none none none
Pfam 51 327 277 PF03009 none Glycerophosphoryl diester phosphodiesterase family IPR030395
ProSiteProfiles 46 334 289 PS51704 none GP-PDE domain profile. IPR030395

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5

0 Targeting