Protein : Qrob_P0187460.2 Q. robur
Protein Identifier  ? Qrob_P0187460.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR10910//PTHR10910:SF86 - EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 490  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003725 double-stranded RNA binding Interacting selectively and non-covalently with double-stranded RNA.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0017s09580g 7 488 + 482 Gaps:30 98.97 487 70.95 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_017279 7 488 + 482 Gaps:23 100.00 497 69.42 0.0 DsRNA-binding protein 3 isoform 1
blastp_kegg lcl|vvi:100254871 4 488 + 485 Gaps:23 100.00 484 69.83 0.0 double-stranded RNA-binding protein 5-like
blastp_kegg lcl|pmum:103330294 7 488 + 482 Gaps:79 98.13 482 70.61 0.0 double-stranded RNA-binding protein 3
blastp_kegg lcl|cit:102607899 7 488 + 482 Gaps:41 100.00 473 65.96 3e-180 double-stranded RNA-binding protein 3-like
blastp_kegg lcl|mdm:103421440 7 488 + 482 Gaps:46 97.72 483 65.68 9e-179 double-stranded RNA-binding protein 5-like
blastp_kegg lcl|mdm:103442108 7 488 + 482 Gaps:46 97.72 483 65.68 9e-179 double-stranded RNA-binding protein 5-like
blastp_kegg lcl|pxb:103938515 7 488 + 482 Gaps:59 97.80 500 63.80 1e-178 double-stranded RNA-binding protein 3-like
blastp_kegg lcl|rcu:RCOM_1446760 4 488 + 485 Gaps:46 100.00 477 65.62 7e-166 double-stranded RNA binding protein putative
blastp_kegg lcl|fve:101308997 7 446 + 440 Gaps:71 96.12 490 60.72 1e-163 double-stranded RNA-binding protein 5-like
blastp_pdb 2l2m_A 88 160 + 73 Gaps:1 96.10 77 41.89 1e-09 mol:protein length:77 Hyponastic leave 1
blastp_pdb 3adj_A 92 160 + 69 Gaps:1 92.11 76 41.43 5e-08 mol:protein length:76 F21M12.9 protein
blastp_uniprot_sprot sp|Q8GY79|DRB5_ARATH 7 275 + 269 Gaps:29 64.63 393 68.50 1e-103 Double-stranded RNA-binding protein 5 OS Arabidopsis thaliana GN DRB5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LJF5|DRB3_ARATH 7 208 + 202 Gaps:10 53.48 359 77.08 1e-101 Double-stranded RNA-binding protein 3 OS Arabidopsis thaliana GN DRB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DKP4|DRB2_ORYSJ 7 211 + 205 Gaps:3 35.08 593 68.27 1e-93 Double-stranded RNA-binding protein 2 OS Oryza sativa subsp. japonica GN DRB2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SKN2|DRB2_ARATH 7 197 + 191 none 44.01 434 69.11 4e-88 Double-stranded RNA-binding protein 2 OS Arabidopsis thaliana GN DRB2 PE 1 SV 1
blastp_uniprot_sprot sp|B7E321|DRB5_ORYSJ 7 161 + 155 none 38.37 404 81.94 6e-86 Double-stranded RNA-binding protein 5 OS Oryza sativa subsp. japonica GN DRB5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9AV50|DRB6_ORYSJ 7 200 + 194 none 37.74 514 68.04 9e-77 Double-stranded RNA-binding protein 6 OS Oryza sativa subsp. japonica GN DRB6 PE 2 SV 1
blastp_uniprot_sprot sp|Q8H1D4|DRB4_ARATH 4 160 + 157 Gaps:8 41.97 355 50.34 2e-34 Double-stranded RNA-binding protein 4 OS Arabidopsis thaliana GN DBR4 PE 1 SV 1
blastp_uniprot_sprot sp|Q5N8Z0|DRB1_ORYSJ 7 159 + 153 Gaps:7 52.61 441 45.26 1e-30 Double-stranded RNA-binding protein 1 OS Oryza sativa subsp. japonica GN DRB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0IQN6|DRB8_ORYSJ 7 160 + 154 Gaps:2 35.85 424 40.79 2e-24 Double-stranded RNA-binding protein 8 OS Oryza sativa subsp. japonica GN DRB8 PE 2 SV 1
blastp_uniprot_sprot sp|Q0IV63|DRB7_ORYSJ 7 160 + 154 Gaps:2 32.14 473 40.79 4e-24 Double-stranded RNA-binding protein 7 OS Oryza sativa subsp. japonica GN DRB7 PE 2 SV 1
rpsblast_cdd gnl|CDD|200945 8 159 + 152 Gaps:1 100.00 66 43.94 3e-13 pfam00035 dsrm Double-stranded RNA binding motif. Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans which is part of the cellular response to dsRNA.
rpsblast_cdd gnl|CDD|28930 8 159 + 152 Gaps:3 98.53 68 53.73 2e-12 cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR RNA helicases Drosophila staufen protein E. coli RNase III RNases H1 and dsRNA dependent adenosine deaminases..
rpsblast_cdd gnl|CDD|178863 8 162 + 155 Gaps:13 41.48 229 43.16 3e-12 PRK00102 rnc ribonuclease III Reviewed.
rpsblast_cdd gnl|CDD|197679 8 160 + 153 Gaps:7 100.00 67 55.22 1e-10 smart00358 DSRM Double-stranded RNA binding motif.
rpsblast_cdd gnl|CDD|30916 8 165 + 158 Gaps:3 31.06 235 43.84 6e-08 COG0571 Rnc dsRNA-specific ribonuclease [Transcription].
rpsblast_cdd gnl|CDD|211723 8 52 + 45 Gaps:1 22.66 203 43.48 3e-07 TIGR02191 RNaseIII ribonuclease III bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains localized to the nucleus and not included in this family.
rpsblast_kog gnl|CDD|38936 58 163 + 106 Gaps:7 30.97 339 42.86 5e-07 KOG3732 KOG3732 KOG3732 Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking secretion and vesicular transport Transcription].

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 7 179 173 PTHR10910:SF86 none none IPR031147
PANTHER 290 318 29 PTHR10910:SF86 none none IPR031147
SUPERFAMILY 8 74 67 SSF54768 none none none
SUPERFAMILY 94 171 78 SSF54768 none none none
Gene3D 94 160 67 G3DSA:3.30.160.20 none none IPR014720
Gene3D 8 74 67 G3DSA:3.30.160.20 none none IPR014720
ProSiteProfiles 7 76 70 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720
PANTHER 290 318 29 PTHR10910 none none none
PANTHER 7 179 173 PTHR10910 none none none
Pfam 94 158 65 PF00035 none Double-stranded RNA binding motif IPR014720
Pfam 8 74 67 PF00035 none Double-stranded RNA binding motif IPR014720
SMART 94 160 67 SM00358 none Double-stranded RNA binding motif IPR014720
SMART 8 75 68 SM00358 none Double-stranded RNA binding motif IPR014720
ProSiteProfiles 93 161 69 PS50137 none Double stranded RNA-binding domain (dsRBD) profile. IPR014720

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5

0 Targeting