2 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0010167 | response to nitrate | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus. |
| GO:0015706 | nitrate transport | The directed movement of nitrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
12 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pop:POPTR_0012s09110g | 1 | 206 | + | 206 | Gaps:1 | 100.00 | 205 | 69.76 | 7e-102 | POPTRDRAFT_570166 hypothetical protein |
| blastp_kegg | lcl|pop:POPTR_0015s09670g | 16 | 206 | + | 191 | none | 93.17 | 205 | 74.35 | 1e-99 | hypothetical protein |
| blastp_kegg | lcl|gmx:100802333 | 1 | 208 | + | 208 | Gaps:2 | 100.00 | 208 | 70.19 | 1e-98 | high-affinity nitrate transporter 3.1-like |
| blastp_kegg | lcl|tcc:TCM_014488 | 1 | 206 | + | 206 | Gaps:5 | 99.50 | 202 | 73.63 | 1e-97 | Nitrate transmembrane transporters |
| blastp_kegg | lcl|rcu:RCOM_1508420 | 3 | 208 | + | 206 | Gaps:2 | 98.55 | 207 | 69.61 | 6e-97 | hypothetical protein |
| blastp_kegg | lcl|pvu:PHAVU_003G205900g | 1 | 208 | + | 208 | Gaps:1 | 100.00 | 207 | 66.67 | 7e-97 | hypothetical protein |
| blastp_kegg | lcl|cit:102626691 | 1 | 208 | + | 208 | Gaps:4 | 100.00 | 204 | 66.18 | 9e-95 | high-affinity nitrate transporter 3.1-like |
| blastp_kegg | lcl|fve:101314660 | 1 | 206 | + | 206 | Gaps:7 | 97.62 | 210 | 68.78 | 1e-94 | high-affinity nitrate transporter 3.1-like |
| blastp_kegg | lcl|pop:POPTR_0015s09660g | 21 | 206 | + | 186 | none | 90.29 | 206 | 73.12 | 1e-94 | POPTRDRAFT_575245 hypothetical protein |
| blastp_kegg | lcl|pmum:103337948 | 1 | 208 | + | 208 | Gaps:4 | 100.00 | 204 | 72.06 | 9e-93 | high-affinity nitrate transporter 3.1 |
| blastp_uniprot_sprot | sp|Q9SB67|NRT32_ARATH | 1 | 206 | + | 206 | Gaps:7 | 99.04 | 209 | 54.11 | 3e-65 | High-affinity nitrate transporter 3.2 OS Arabidopsis thaliana GN NRT3.2 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9FGS5|NRT31_ARATH | 1 | 208 | + | 208 | Gaps:12 | 100.00 | 210 | 56.19 | 7e-65 | High-affinity nitrate transporter 3.1 OS Arabidopsis thaliana GN NRT3.1 PE 1 SV 1 |
9 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Phobius | 7 | 18 | 12 | SIGNAL_PEPTIDE_H_REGION | none | Hydrophobic region of a signal peptide. | none |
| Phobius | 24 | 177 | 154 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| ProSiteProfiles | 1 | 16 | 16 | PS51257 | none | Prokaryotic membrane lipoprotein lipid attachment site profile. | none |
| Phobius | 1 | 23 | 23 | SIGNAL_PEPTIDE | none | Signal peptide region | none |
| Phobius | 1 | 6 | 6 | SIGNAL_PEPTIDE_N_REGION | none | N-terminal region of a signal peptide. | none |
| Phobius | 19 | 23 | 5 | SIGNAL_PEPTIDE_C_REGION | none | C-terminal region of a signal peptide. | none |
| Phobius | 178 | 197 | 20 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 198 | 208 | 11 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| PIRSF | 1 | 206 | 206 | PIRSF012939 | none | none | IPR016605 |
7 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran1_2004_QTL5_peak_Bud_burst_A4 | Qrob_Chr10 | 10 | s_1C8OKQ_688 | v_12844_707 | 25,6 | 13,9 | 39,9 | lod | 2,7 | 6,1 |
| Bourran2_2002_QTL13_peak_Bud_burst_3P | Qrob_Chr10 | 10 | s_1B1AG7_637 | s_1A3A1N_709 | 19,44 | 0 | 49,44 | lod | 3 | 5,6 |
| Bourran2_2002_QTL15_peak_Bud_burst_A4 | Qrob_Chr10 | 10 | v_7579_71 | s_1ATZMJ_189 | 23,94 | 0 | 43,64 | lod | 3,7 | 5,4 |
| Bourran2_2014_vSeqBC_3P | Qrob_Chr10 | 10 | s_1A6CK6_610 | v_7092_29 | 4,28 | 0 | 23,27 | lod | 2,8619 | 7 |
| Bourran2_2014_vSeqBC_A4 | Qrob_Chr10 | 10 | s_1BAM4E_1326 | s_1C0HD0_1012 | 36,88 | 7,71 | 46,03 | lod | 2,6164 | 7,3 |
| Champenoux_2015_nPriLBD_3P | Qrob_Chr10 | 10 | v_15000_157 | v_15000_310 | 15,68 | 15,9 | 15,91 | lod | 2.4 | 5.5 |
| PM_1999_QTL16_peak_Bud_burst_3P | Qrob_Chr10 | 10 | s_1B6YNI_505 | s_1A1ZO_1322 | 7,48 | 0 | 31,48 | lod | 4 | 7,1 |
