Protein : Qrob_P0180310.2 Q. robur
Protein Identifier  ? Qrob_P0180310.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K03250 - translation initiation factor eIF-3 subunit 6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 438  
Kegg Orthology  K03250
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0005852 eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100797748 1 437 + 437 none 100.00 437 92.22 0.0 eukaryotic translation initiation factor 3 subunit E-like
blastp_kegg lcl|pper:PRUPE_ppa005923mg 1 437 + 437 none 100.00 437 92.22 0.0 hypothetical protein
blastp_kegg lcl|gmx:100788418 1 437 + 437 none 100.00 437 92.22 0.0 eukaryotic translation initiation factor 3 subunit E-like
blastp_kegg lcl|pmum:103342436 1 437 + 437 none 100.00 437 91.99 0.0 eukaryotic translation initiation factor 3 subunit E
blastp_kegg lcl|cam:101513922 1 437 + 437 none 100.00 437 91.08 0.0 eukaryotic translation initiation factor 3 subunit E-like
blastp_kegg lcl|mdm:103415044 1 437 + 437 none 100.00 437 91.99 0.0 eukaryotic translation initiation factor 3 subunit E-like
blastp_kegg lcl|pvu:PHAVU_007G250100g 1 437 + 437 none 100.00 437 91.53 0.0 hypothetical protein
blastp_kegg lcl|cmo:103502443 1 437 + 437 none 100.00 437 91.08 0.0 eukaryotic translation initiation factor 3 subunit E
blastp_kegg lcl|csv:101205199 1 437 + 437 none 100.00 437 90.85 0.0 eukaryotic translation initiation factor 3 subunit E-like
blastp_kegg lcl|tcc:TCM_026561 1 437 + 437 none 100.00 437 91.53 0.0 Eukaryotic translation initiation factor 3E
blastp_uniprot_sprot sp|A7RWP6|EIF3E_NEMVE 1 427 + 427 Gaps:15 93.75 448 56.67 1e-167 Eukaryotic translation initiation factor 3 subunit E OS Nematostella vectensis GN v1g163572 PE 3 SV 1
blastp_uniprot_sprot sp|Q641X8|EIF3E_RAT 1 437 + 437 Gaps:20 96.85 445 54.29 9e-163 Eukaryotic translation initiation factor 3 subunit E OS Rattus norvegicus GN Eif3e PE 2 SV 1
blastp_uniprot_sprot sp|Q5R8K9|EIF3E_PONAB 1 437 + 437 Gaps:20 96.85 445 54.29 9e-163 Eukaryotic translation initiation factor 3 subunit E OS Pongo abelii GN EIF3E PE 2 SV 2
blastp_uniprot_sprot sp|P60229|EIF3E_MOUSE 1 437 + 437 Gaps:20 96.85 445 54.29 9e-163 Eukaryotic translation initiation factor 3 subunit E OS Mus musculus GN Eif3e PE 1 SV 1
blastp_uniprot_sprot sp|Q4R6G8|EIF3E_MACFA 1 437 + 437 Gaps:20 96.85 445 54.29 9e-163 Eukaryotic translation initiation factor 3 subunit E OS Macaca fascicularis GN EIF3E PE 2 SV 1
blastp_uniprot_sprot sp|P60228|EIF3E_HUMAN 1 437 + 437 Gaps:20 96.85 445 54.29 9e-163 Eukaryotic translation initiation factor 3 subunit E OS Homo sapiens GN EIF3E PE 1 SV 1
blastp_uniprot_sprot sp|Q5ZLA5|EIF3E_CHICK 1 437 + 437 Gaps:20 96.85 445 53.83 9e-163 Eukaryotic translation initiation factor 3 subunit E OS Gallus gallus GN EIF3E PE 2 SV 1
blastp_uniprot_sprot sp|Q6P7L9|EIF3E_XENTR 1 437 + 437 Gaps:19 96.86 446 53.47 1e-162 Eukaryotic translation initiation factor 3 subunit E OS Xenopus tropicalis GN eif3e PE 2 SV 1
blastp_uniprot_sprot sp|Q3T102|EIF3E_BOVIN 1 437 + 437 Gaps:20 96.85 445 54.29 1e-162 Eukaryotic translation initiation factor 3 subunit E OS Bos taurus GN EIF3E PE 2 SV 1
blastp_uniprot_sprot sp|Q05AY2|EI3EA_XENLA 1 423 + 423 Gaps:18 93.95 446 54.89 2e-162 Eukaryotic translation initiation factor 3 subunit E-A OS Xenopus laevis GN eif3e-a PE 2 SV 1
rpsblast_cdd gnl|CDD|192296 5 137 + 133 none 100.00 133 45.11 6e-36 pfam09440 eIF3_N eIF3 subunit 6 N terminal domain. This is the N terminal domain of subunit 6 translation initiation factor eIF3.
rpsblast_cdd gnl|CDD|201772 286 398 + 113 Gaps:13 100.00 100 24.00 3e-11 pfam01399 PCI PCI domain. This domain has also been called the PINT motif (Proteasome Int-6 Nip-1 and TRIP-15).
rpsblast_cdd gnl|CDD|197859 332 409 + 78 none 88.64 88 26.92 5e-09 smart00753 PAM PCI/PINT associated module.
rpsblast_cdd gnl|CDD|197510 332 409 + 78 none 88.64 88 26.92 5e-09 smart00088 PINT motif in proteasome subunits Int-6 Nip-1 and TRIP-15. Also called the PCI (Proteasome COP9 Initiation factor 3) domain. Unknown function.
rpsblast_kog gnl|CDD|37969 1 437 + 437 Gaps:16 99.77 432 60.79 1e-177 KOG2758 KOG2758 KOG2758 Translation initiation factor 3 subunit e (eIF-3e) [Translation ribosomal structure and biogenesis].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 5 137 133 PF09440 none eIF3 subunit 6 N terminal domain IPR019010
PIRSF 1 437 437 PIRSF016255 none none IPR016650
Gene3D 349 401 53 G3DSA:1.10.10.10 none none IPR011991
SMART 332 416 85 SM00088 none motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 IPR000717
PANTHER 1 437 437 PTHR10317 none none IPR016650
Pfam 285 399 115 PF01399 none PCI domain IPR000717
Hamap 2 429 428 MF_03004 none Eukaryotic translation initiation factor 3 subunit E [EIF3E]. IPR016650
SUPERFAMILY 332 403 72 SSF46785 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting