Protein : Qrob_P0178940.2 Q. robur

Protein Identifier  ? Qrob_P0178940.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) PTHR11183:SF44 - UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 2 (PTHR11183:SF44) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 250  

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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016757 transferase activity, transferring glycosyl groups Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
GO:0005794 Golgi apparatus A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
GO:0009834 plant-type secondary cell wall biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana.
GO:0015020 glucuronosyltransferase activity Catalysis of the reaction: UDP-glucuronate + acceptor = UDP + acceptor beta-D-glucuronoside.
GO:0045492 xylan biosynthetic process The chemical reactions and pathways resulting in the formation of xylan, a polymer containing a beta-1,4-linked D-xylose backbone.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_026564 1 248 + 248 Gaps:10 44.32 555 57.72 4e-78 Plant glycogenin-like starch initiation protein 4 putative
blastp_kegg lcl|tcc:TCM_026565 54 248 + 195 Gaps:6 33.63 568 66.49 8e-78 Plant glycogenin-like starch initiation protein 5 putative
blastp_kegg lcl|cic:CICLE_v10004021mg 37 248 + 212 Gaps:7 36.32 570 61.35 1e-75 hypothetical protein
blastp_kegg lcl|mdm:103451326 10 248 + 239 Gaps:24 43.46 573 52.61 6e-75 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5
blastp_kegg lcl|cit:102628408 40 248 + 209 Gaps:7 35.79 570 61.27 8e-75 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4-like
blastp_kegg lcl|cic:CICLE_v10000664mg 40 248 + 209 Gaps:7 34.58 590 61.27 9e-75 hypothetical protein
blastp_kegg lcl|pmum:103318579 44 247 + 204 Gaps:10 35.61 556 67.68 9e-74 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5
blastp_kegg lcl|fve:101296024 16 248 + 233 Gaps:20 43.39 560 54.32 1e-72 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4-like
blastp_kegg lcl|pper:PRUPE_ppa022628mg 63 248 + 186 Gaps:8 36.96 487 70.00 3e-72 hypothetical protein
blastp_kegg lcl|cit:102626172 37 248 + 212 Gaps:7 36.32 570 59.90 3e-72 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4-like
blastp_uniprot_sprot sp|Q9FZ37|GUX4_ARATH 1 248 + 248 Gaps:18 44.17 557 46.75 4e-58 Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 OS Arabidopsis thaliana GN GUX4 PE 3 SV 1
blastp_uniprot_sprot sp|F4HZC3|GUX5_ARATH 1 241 + 241 Gaps:25 43.82 566 48.39 2e-57 Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 OS Arabidopsis thaliana GN GUX5 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GWW4|GUX2_ARATH 63 247 + 185 Gaps:12 29.36 596 46.29 2e-38 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS Arabidopsis thaliana GN GUX2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8W4A7|GUX3_ARATH 55 240 + 186 Gaps:12 28.80 618 35.96 4e-31 Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 OS Arabidopsis thaliana GN GUX3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LSB1|GUX1_ARATH 68 240 + 173 Gaps:20 25.34 659 37.13 3e-22 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS Arabidopsis thaliana GN GUX1 PE 2 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 15 26 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 32 249 218 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 194 247 54 PTHR11183 none none IPR002495
Phobius 1 14 14 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 31 31 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 27 31 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 194 247 54 PTHR11183:SF44 none none IPR030519

1 Localization

Analysis Start End Length
TMHMM 13 30 17

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 30   Secretory pathway 4 0.753 0.402 NON-PLANT 30