Protein : Qrob_P0178900.2 Q. robur
Protein Identifier  ? Qrob_P0178900.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0393//KOG0395//KOG1707 - Ras-related small GTPase Rho type [General function prediction only]. // Ras-related GTPase [General function prediction only]. // Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 648  
Kegg Orthology  K07870
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0 Synonyms

9 GO Terms

Identifier Name Description
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0005509 calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
GO:0005739 mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0007264 small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO:0003924 GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO:0007005 mitochondrion organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components.
GO:0031307 integral component of mitochondrial outer membrane The component of the mitochondrial outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103344644 1 647 + 647 none 100.00 647 85.94 0.0 mitochondrial Rho GTPase 1-like
blastp_kegg lcl|pper:PRUPE_ppa002661mg 1 647 + 647 none 100.00 647 85.63 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10000541mg 1 646 + 646 Gaps:1 99.69 649 84.23 0.0 hypothetical protein
blastp_kegg lcl|cit:102615004 1 646 + 646 Gaps:1 99.69 649 84.23 0.0 mitochondrial Rho GTPase 1-like
blastp_kegg lcl|vvi:100249429 1 646 + 646 none 99.85 647 83.75 0.0 mitochondrial Rho GTPase 1-like
blastp_kegg lcl|cmo:103495076 1 646 + 646 none 99.85 647 84.67 0.0 mitochondrial Rho GTPase 1-like
blastp_kegg lcl|tcc:TCM_026568 6 646 + 641 Gaps:1 99.69 644 85.36 0.0 Mitochondrial Rho GTPase isoform 1
blastp_kegg lcl|csv:101210348 1 647 + 647 none 100.00 647 83.93 0.0 mitochondrial Rho GTPase 1-like
blastp_kegg lcl|csv:101228682 1 647 + 647 Gaps:1 100.00 648 83.95 0.0 mitochondrial Rho GTPase 1-like
blastp_kegg lcl|fve:101297455 1 646 + 646 Gaps:2 99.85 649 83.33 0.0 mitochondrial Rho GTPase 1-like
blastp_pdb 2j1l_A 3 184 + 182 Gaps:14 89.72 214 32.29 2e-13 mol:protein length:214 RHO-RELATED GTP-BINDING PROTEIN RHOD
blastp_pdb 2w2x_B 13 182 + 170 Gaps:14 97.30 185 27.78 1e-11 mol:protein length:185 RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 2
blastp_pdb 2w2x_A 13 182 + 170 Gaps:14 97.30 185 27.78 1e-11 mol:protein length:185 RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 2
blastp_pdb 2w2t_A 13 182 + 170 Gaps:14 97.30 185 27.78 1e-11 mol:protein length:185 RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 2
blastp_pdb 2nty_D 17 182 + 166 Gaps:8 96.67 180 27.59 1e-11 mol:protein length:180 Rac-like GTP-binding protein ARAC5
blastp_pdb 2nty_C 17 182 + 166 Gaps:8 96.67 180 27.59 1e-11 mol:protein length:180 Rac-like GTP-binding protein ARAC5
blastp_pdb 3b13_D 7 180 + 174 Gaps:14 100.00 184 27.17 2e-11 mol:protein length:184 Ras-related C3 botulinum toxin substrate 1
blastp_pdb 3b13_B 7 180 + 174 Gaps:14 100.00 184 27.17 2e-11 mol:protein length:184 Ras-related C3 botulinum toxin substrate 1
blastp_pdb 3bwd_D 17 182 + 166 Gaps:8 95.60 182 25.29 4e-11 mol:protein length:182 Rac-like GTP-binding protein ARAC6
blastp_pdb 1ds6_A 16 182 + 167 Gaps:14 92.19 192 27.68 7e-11 mol:protein length:192 RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 2
blastp_uniprot_sprot sp|P0CO78|GEM1_CRYNJ 14 630 + 617 Gaps:64 96.06 686 38.09 7e-143 Mitochondrial Rho GTPase 1 OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN GEM1 PE 3 SV 1
blastp_uniprot_sprot sp|P0CO79|GEM1_CRYNB 14 630 + 617 Gaps:64 96.06 686 38.09 7e-143 Mitochondrial Rho GTPase 1 OS Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN GEM1 PE 3 SV 1
blastp_uniprot_sprot sp|Q5ZM83|MIRO2_CHICK 17 643 + 627 Gaps:45 99.35 618 40.72 1e-134 Mitochondrial Rho GTPase 2 OS Gallus gallus GN RHOT2 PE 2 SV 1
blastp_uniprot_sprot sp|Q4PB75|GEM1_USTMA 14 550 + 537 Gaps:74 79.65 752 39.07 5e-134 Mitochondrial Rho GTPase 1 OS Ustilago maydis (strain 521 / FGSC 9021) GN GEM1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8BG51|MIRO1_MOUSE 14 637 + 624 Gaps:51 96.83 631 40.10 5e-131 Mitochondrial Rho GTPase 1 OS Mus musculus GN Rhot1 PE 2 SV 1
blastp_uniprot_sprot sp|Q2HJF8|MIRO1_BOVIN 14 637 + 624 Gaps:43 96.83 631 39.61 2e-130 Mitochondrial Rho GTPase 1 OS Bos taurus GN RHOT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5ZM73|MIRO1_CHICK 14 637 + 624 Gaps:40 98.87 619 38.89 2e-130 Mitochondrial Rho GTPase 1 OS Gallus gallus GN RHOT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8IXI2|MIRO1_HUMAN 14 637 + 624 Gaps:43 98.87 618 39.44 4e-130 Mitochondrial Rho GTPase 1 OS Homo sapiens GN RHOT1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8IXI1|MIRO2_HUMAN 14 597 + 584 Gaps:26 93.53 618 40.83 2e-129 Mitochondrial Rho GTPase 2 OS Homo sapiens GN RHOT2 PE 1 SV 2
blastp_uniprot_sprot sp|Q6NVC5|MIRO1_DANRE 14 637 + 624 Gaps:48 98.87 619 38.40 7e-128 Mitochondrial Rho GTPase 1-A OS Danio rerio GN rhot1a PE 2 SV 1

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 19 182 164 SM00174 "Reactome:REACT_11044" Rho (Ras homology) subfamily of Ras-like small GTPases IPR003578
Pfam 231 318 88 PF08356 "Reactome:REACT_11044" EF hand associated IPR013567
SUPERFAMILY 17 215 199 SSF52540 none none IPR027417
Gene3D 17 183 167 G3DSA:3.40.50.300 none none IPR027417
Pfam 430 548 119 PF08477 none Miro-like protein IPR013684
Pfam 18 130 113 PF08477 none Miro-like protein IPR013684
PANTHER 11 322 312 PTHR24072 none none none
PRINTS 118 131 14 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 17 38 22 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 157 179 23 PR00449 none Transforming protein P21 ras signature IPR001806
ProSiteProfiles 197 232 36 PS50222 none EF-hand calcium-binding domain profile. IPR002048
SUPERFAMILY 424 599 176 SSF52540 none none IPR027417
PIRSF 13 646 634 PIRSF037488 "Reactome:REACT_11044" none IPR021181
Phobius 619 639 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 11 322 312 PTHR24072:SF73 none none none
SMART 17 182 166 SM00175 none Rab subfamily of small GTPases IPR003579
ProSiteProfiles 317 352 36 PS50222 none EF-hand calcium-binding domain profile. IPR002048
ProSitePatterns 210 222 13 PS00018 none EF-hand calcium-binding domain. IPR018247
Gene3D 198 236 39 G3DSA:1.10.238.10 none none IPR011992
Pfam 353 423 71 PF08355 "Reactome:REACT_11044" EF hand associated IPR013566
ProSiteProfiles 421 647 227 PS51423 "Reactome:REACT_11044" Miro domain profile. IPR020860
Phobius 1 618 618 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 310 417 108 G3DSA:1.10.238.10 none none IPR011992
ProSiteProfiles 10 162 153 PS51423 "Reactome:REACT_11044" Miro domain profile. IPR020860
SUPERFAMILY 318 388 71 SSF47473 none none none
SUPERFAMILY 197 281 85 SSF47473 none none none
Phobius 640 647 8 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 418 609 192 G3DSA:3.40.50.300 none none IPR027417

1 Localization

Analysis Start End Length
TMHMM 618 640 22

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 88   Mitochondrion 4 0.029 0.723 NON-PLANT 88