Protein : Qrob_P0178510.2 Q. robur
Protein Identifier  ? Qrob_P0178510.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=5) K14376 - poly(A) polymerase [EC:2.7.7.19] Code Enzyme  EC:2.7.7.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 761  
Kegg Orthology  K14376
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0016779 nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.
GO:0004652 polynucleotide adenylyltransferase activity Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group.
GO:0043631 RNA polyadenylation The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule.
GO:0031123 RNA 3'-end processing Any process involved in forming the mature 3' end of an RNA molecule.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100263460 1 747 + 747 Gaps:27 93.77 770 76.18 0.0 poly(A) polymerase-like
blastp_kegg lcl|pmum:103327826 1 747 + 747 Gaps:68 95.52 715 80.82 0.0 poly(A) polymerase type 3-like
blastp_kegg lcl|cmo:103500775 1 737 + 737 Gaps:18 94.50 763 72.68 0.0 poly(A) polymerase PAPalpha-like
blastp_kegg lcl|cit:102613009 1 748 + 748 Gaps:84 95.27 697 78.61 0.0 poly(A) polymerase-like
blastp_kegg lcl|cic:CICLE_v10025039mg 1 754 + 754 Gaps:84 98.97 677 78.21 0.0 hypothetical protein
blastp_kegg lcl|mdm:103443740 1 750 + 750 Gaps:72 95.91 709 76.91 0.0 poly(A) polymerase type 3-like
blastp_kegg lcl|pxb:103931051 1 735 + 735 Gaps:71 96.52 690 77.78 0.0 poly(A) polymerase type 3-like
blastp_kegg lcl|pper:PRUPE_ppa022017mg 1 590 + 590 Gaps:14 99.48 581 84.60 0.0 hypothetical protein
blastp_kegg lcl|csv:101204291 1 737 + 737 Gaps:34 94.95 772 69.85 0.0 poly(A) polymerase-like
blastp_kegg lcl|pxb:103938899 1 735 + 735 Gaps:71 96.52 690 77.48 0.0 poly(A) polymerase type 3-like
blastp_pdb 1q79_A 24 513 + 490 Gaps:24 95.72 514 44.92 2e-131 mol:protein length:514 Poly(A) polymerase alpha
blastp_pdb 1q78_A 24 513 + 490 Gaps:24 95.72 514 44.92 2e-131 mol:protein length:514 Poly(A) polymerase alpha
blastp_pdb 1f5a_A 24 513 + 490 Gaps:24 95.91 513 44.92 3e-131 mol:protein length:513 POLY(A) POLYMERASE
blastp_pdb 2hhp_A 24 477 + 454 Gaps:11 83.96 530 41.12 1e-112 mol:protein length:530 Poly(A) polymerase
blastp_pdb 3c66_B 24 477 + 454 Gaps:11 82.87 537 41.12 2e-112 mol:protein length:537 Poly(A) polymerase
blastp_pdb 3c66_A 24 477 + 454 Gaps:11 82.87 537 41.12 2e-112 mol:protein length:537 Poly(A) polymerase
blastp_pdb 1fa0_B 24 477 + 454 Gaps:11 82.87 537 41.12 2e-112 mol:protein length:537 POLY(A)-POLYMERASE
blastp_pdb 1fa0_A 24 477 + 454 Gaps:11 82.87 537 41.12 2e-112 mol:protein length:537 POLY(A)-POLYMERASE
blastp_pdb 2o1p_B 24 477 + 454 Gaps:11 81.50 546 41.12 2e-112 mol:protein length:546 Poly(A) polymerase
blastp_pdb 2o1p_A 24 477 + 454 Gaps:11 81.50 546 41.12 2e-112 mol:protein length:546 Poly(A) polymerase
blastp_uniprot_sprot sp|Q54J73|PAP_DICDI 27 554 + 528 Gaps:33 63.66 809 44.27 9e-146 Poly(A) polymerase OS Dictyostelium discoideum GN papA PE 3 SV 1
blastp_uniprot_sprot sp|Q9WVP6|PAPOB_MOUSE 2 501 + 500 Gaps:29 76.29 641 45.19 2e-132 Poly(A) polymerase beta OS Mus musculus GN Papolb PE 1 SV 2
blastp_uniprot_sprot sp|Q9NRJ5|PAPOB_HUMAN 25 508 + 484 Gaps:20 76.42 636 45.27 3e-131 Poly(A) polymerase beta OS Homo sapiens GN PAPOLB PE 2 SV 1
blastp_uniprot_sprot sp|P25500|PAPOA_BOVIN 24 513 + 490 Gaps:24 66.58 739 44.92 6e-131 Poly(A) polymerase alpha OS Bos taurus GN PAPOLA PE 1 SV 3
blastp_uniprot_sprot sp|P51003|PAPOA_HUMAN 24 513 + 490 Gaps:24 66.04 745 44.72 1e-130 Poly(A) polymerase alpha OS Homo sapiens GN PAPOLA PE 1 SV 4
blastp_uniprot_sprot sp|Q61183|PAPOA_MOUSE 24 506 + 483 Gaps:24 65.63 739 44.95 3e-130 Poly(A) polymerase alpha OS Mus musculus GN Papola PE 1 SV 4
blastp_uniprot_sprot sp|Q9BWT3|PAPOG_HUMAN 24 505 + 482 Gaps:16 65.22 736 42.92 2e-128 Poly(A) polymerase gamma OS Homo sapiens GN PAPOLG PE 1 SV 2
blastp_uniprot_sprot sp|Q6PCL9|PAPOG_MOUSE 24 505 + 482 Gaps:20 64.95 739 43.33 3e-128 Poly(A) polymerase gamma OS Mus musculus GN Papolg PE 1 SV 1
blastp_uniprot_sprot sp|P51004|PAPO1_XENLA 24 513 + 490 Gaps:26 68.53 715 44.29 2e-126 Poly(A) polymerase alpha-A (Fragment) OS Xenopus laevis GN papola-a PE 2 SV 1
blastp_uniprot_sprot sp|O42617|PAP_CANAL 23 439 + 417 Gaps:10 73.30 558 46.45 4e-124 Poly(A) polymerase PAPalpha OS Candida albicans (strain SC5314 / ATCC MYA-2876) GN PAPALPHA PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 24 636 613 PTHR10682:SF22 none none none
Gene3D 167 379 213 G3DSA:1.10.1410.10 none none none
Gene3D 380 506 127 G3DSA:3.30.70.590 none none IPR007010
Pfam 100 158 59 PF01909 none Nucleotidyltransferase domain IPR002934
SUPERFAMILY 222 378 157 SSF81631 none none none
Pfam 381 514 134 PF04926 none Poly(A) polymerase predicted RNA binding domain IPR007010
Pfam 24 378 355 PF04928 none Poly(A) polymerase central domain IPR007012
SUPERFAMILY 24 220 197 SSF81301 none none none
PANTHER 24 636 613 PTHR10682 none none IPR014492
SUPERFAMILY 381 507 127 SSF55003 none none IPR011068

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting