Protein : Qrob_P0178110.2 Q. robur
Protein Identifier  ? Qrob_P0178110.2 Organism . Name  Quercus robur
Score  9.0 Score Type  egn
Protein Description  (M=4) K03141 - transcription initiation factor TFIIH subunit 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 355  
Kegg Orthology  K03141
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006289 nucleotide-excision repair A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0000439 core TFIIH complex The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103497008 1 341 + 341 Gaps:62 62.02 595 65.58 1e-148 probable RNA polymerase II transcription factor B subunit 1-1
blastp_kegg lcl|pmum:103318967 1 341 + 341 Gaps:49 65.74 578 64.74 1e-145 probable RNA polymerase II transcription factor B subunit 1-1
blastp_kegg lcl|pxb:103933400 1 341 + 341 Gaps:67 61.72 606 63.10 3e-142 probable RNA polymerase II transcription factor B subunit 1-1
blastp_kegg lcl|pxb:103946393 1 341 + 341 Gaps:63 61.67 600 64.05 2e-140 probable RNA polymerase II transcription factor B subunit 1-3
blastp_kegg lcl|vvi:100249755 1 341 + 341 Gaps:70 62.62 602 63.40 3e-140 probable RNA polymerase II transcription factor B subunit 1-1-like
blastp_kegg lcl|tcc:TCM_041171 1 341 + 341 Gaps:72 57.43 646 61.99 3e-138 BSD domain (BTF2-like transcription factors Synapse-associated proteins and DOS2-like proteins) isoform 2
blastp_kegg lcl|pper:PRUPE_ppa003591mg 1 349 + 349 Gaps:64 60.92 563 68.22 9e-135 hypothetical protein
blastp_kegg lcl|mdm:103441983 1 341 + 341 Gaps:63 59.11 626 61.62 2e-133 probable RNA polymerase II transcription factor B subunit 1-3
blastp_kegg lcl|mdm:103411061 1 341 + 341 Gaps:63 58.82 629 61.62 3e-133 probable RNA polymerase II transcription factor B subunit 1-3
blastp_kegg lcl|gmx:100811780 1 341 + 341 Gaps:67 61.67 587 59.67 4e-124 probable RNA polymerase II transcription factor B subunit 1-3-like
blastp_uniprot_sprot sp|Q9M322|TFB1C_ARATH 1 341 + 341 Gaps:72 64.08 579 54.99 1e-110 Probable RNA polymerase II transcription factor B subunit 1-3 OS Arabidopsis thaliana GN TFB1-3 PE 2 SV 2
blastp_uniprot_sprot sp|Q3ECP0|TFB1A_ARATH 1 341 + 341 Gaps:72 62.77 591 54.99 3e-109 Probable RNA polymerase II transcription factor B subunit 1-1 OS Arabidopsis thaliana GN TFB1-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q55FP1|TF2H1_DICDI 91 301 + 211 Gaps:26 32.57 697 25.55 2e-19 General transcription factor IIH subunit 1 OS Dictyostelium discoideum GN gtf2h1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9DBA9|TF2H1_MOUSE 62 217 + 156 Gaps:24 32.91 547 31.11 2e-16 General transcription factor IIH subunit 1 OS Mus musculus GN Gtf2h1 PE 2 SV 2
blastp_uniprot_sprot sp|P32780|TF2H1_HUMAN 62 217 + 156 Gaps:25 33.03 548 30.39 3e-16 General transcription factor IIH subunit 1 OS Homo sapiens GN GTF2H1 PE 1 SV 1
blastp_uniprot_sprot sp|Q960E8|TF2H1_DROME 95 200 + 106 Gaps:21 20.34 585 37.82 1e-14 General transcription factor IIH subunit 1 OS Drosophila melanogaster GN Tfb1 PE 2 SV 1
rpsblast_kog gnl|CDD|37285 6 341 + 336 Gaps:79 64.42 548 28.90 6e-51 KOG2074 KOG2074 KOG2074 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH subunit TFB1 [Transcription Replication recombination and repair].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 93 135 43 SSF140383 none none none
PANTHER 27 341 315 PTHR12856 none none IPR027079
SMART 83 139 57 SM00751 none domain in transcription factors and synapse-associated proteins IPR005607
SMART 149 201 53 SM00751 none domain in transcription factors and synapse-associated proteins IPR005607
Pfam 93 135 43 PF03909 none BSD domain IPR005607
Pfam 165 204 40 PF03909 none BSD domain IPR005607
ProSiteProfiles 165 201 37 PS50858 none BSD domain profile. IPR005607
SUPERFAMILY 154 203 50 SSF140383 none none none
ProSiteProfiles 85 139 55 PS50858 none BSD domain profile. IPR005607

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting