Protein : Qrob_P0177460.2 Q. robur
Protein Identifier  ? Qrob_P0177460.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=8) KOG0513//KOG4231 - Ca2+-independent phospholipase A2 [Lipid transport and metabolism]. // Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 384  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0006629 lipid metabolic process The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_004380 1 383 + 383 Gaps:7 100.00 384 85.42 0.0 PATATIN-like protein 9 IIIB isoform 1
blastp_kegg lcl|cic:CICLE_v10020528mg 1 383 + 383 Gaps:7 100.00 390 82.82 0.0 hypothetical protein
blastp_kegg lcl|cit:102613176 1 383 + 383 Gaps:7 100.00 390 82.82 0.0 patatin group D-2-like
blastp_kegg lcl|pop:POPTR_0005s23170g 1 383 + 383 Gaps:5 100.00 378 83.33 0.0 POPTRDRAFT_831588 patatin-related family protein
blastp_kegg lcl|rcu:RCOM_0557780 1 383 + 383 Gaps:6 100.00 389 79.43 0.0 Patatin T5 precursor putative
blastp_kegg lcl|pper:PRUPE_ppa007085mg 1 383 + 383 Gaps:13 100.00 382 83.51 0.0 hypothetical protein
blastp_kegg lcl|pxb:103957236 1 383 + 383 Gaps:9 100.00 386 80.05 0.0 probable inactive patatin-like protein 9
blastp_kegg lcl|pxb:103957261 1 383 + 383 Gaps:9 100.00 386 80.05 0.0 probable inactive patatin-like protein 9
blastp_kegg lcl|pxb:103957255 1 383 + 383 Gaps:9 100.00 386 80.05 0.0 probable inactive patatin-like protein 9
blastp_kegg lcl|ath:AT3G63200 1 383 + 383 Gaps:3 99.48 384 78.01 0.0 PLP9 PATATIN-like protein 9
blastp_pdb 1oxw_C 30 358 + 329 Gaps:32 90.88 373 27.14 5e-21 mol:protein length:373 Patatin
blastp_pdb 1oxw_B 30 358 + 329 Gaps:32 90.88 373 27.14 5e-21 mol:protein length:373 Patatin
blastp_pdb 1oxw_A 30 358 + 329 Gaps:32 90.88 373 27.14 5e-21 mol:protein length:373 Patatin
blastp_uniprot_sprot sp|Q2MY58|PATA3_SOLTU 30 358 + 329 Gaps:27 87.86 387 27.35 7e-31 Patatin group A-3 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q41487|PAT16_SOLTU 30 358 + 329 Gaps:28 87.82 386 27.73 2e-24 Patatin-16 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q2MY56|PATD2_SOLTU 30 358 + 329 Gaps:27 87.86 387 27.94 2e-23 Patatin group D-2 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q3YJT4|PT1K2_SOLTU 30 358 + 329 Gaps:27 90.67 375 27.35 3e-23 Patatin-1-Kuras 2 OS Solanum tuberosum GN pat1-k2 PE 1 SV 1
blastp_uniprot_sprot sp|Q2MY50|PAT01_SOLTU 30 358 + 329 Gaps:27 87.86 387 27.35 3e-23 Patatin-01 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q2MY60|PAT02_SOLTU 30 358 + 329 Gaps:27 87.86 387 27.35 3e-23 Patatin-02 OS Solanum tuberosum GN StPat14K07.03 PE 2 SV 1
blastp_uniprot_sprot sp|Q2MY43|PAT08_SOLTU 30 358 + 329 Gaps:27 87.86 387 27.65 9e-23 Patatin-08 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q2MY59|PATA2_SOLTU 30 358 + 329 Gaps:27 87.86 387 27.06 1e-22 Patatin group A-2 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q2MY55|PATD3_SOLTU 30 358 + 329 Gaps:27 87.86 387 27.35 7e-22 Patatin group D-3 OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|Q2MY40|PAT11_SOLTU 30 358 + 329 Gaps:31 88.89 387 25.87 8e-22 Patatin-11 OS Solanum tuberosum PE 2 SV 1
rpsblast_cdd gnl|CDD|132854 29 358 + 330 Gaps:19 100.00 329 34.35 4e-52 cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2 EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids glycolipids sulfolipids and mono- and diacylglycerols thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm small residue X any residue and Nu nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
rpsblast_cdd gnl|CDD|132838 30 317 + 288 Gaps:63 90.31 258 37.77 2e-50 cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase includes PNPLA8 PNPLA9 and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2 EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids glycolipids sulfolipids and mono- and diacylglycerols thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm small residue X any residue and Nu nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
rpsblast_cdd gnl|CDD|132853 26 343 + 318 Gaps:38 96.28 349 31.55 1e-41 cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2 EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids glycolipids sulfolipids and mono- and diacylglycerols thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm small residue X any residue and Nu nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
rpsblast_cdd gnl|CDD|33420 25 230 + 206 Gaps:16 51.27 394 31.19 4e-22 COG3621 COG3621 Patatin [General function prediction only].
rpsblast_cdd gnl|CDD|132852 27 259 + 233 Gaps:48 71.88 288 34.30 3e-20 cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2 EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids glycolipids sulfolipids and mono- and diacylglycerols thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm small residue X any residue and Nu nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
rpsblast_cdd gnl|CDD|132856 29 259 + 231 Gaps:21 67.44 344 28.45 2e-17 cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2 EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids glycolipids sulfolipids and mono- and diacylglycerols thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm small residue X any residue and Nu nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
rpsblast_cdd gnl|CDD|201943 31 232 + 202 Gaps:25 100.00 189 24.34 4e-17 pfam01734 Patatin Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 26 314 289 SSF52151 none none IPR016035
Gene3D 23 362 340 G3DSA:3.40.1090.10 none none none
Pfam 31 231 201 PF01734 none Patatin-like phospholipase IPR002641
PANTHER 1 370 370 PTHR32241 none none none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting