Protein : Qrob_P0176000.2 Q. robur
Protein Identifier  ? Qrob_P0176000.2 Organism . Name  Quercus robur
Score  98.1 Score Type  egn
Protein Description  (M=1) KOG1052//KOG1054//KOG1056//KOG4440 - Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits G-protein coupled receptor superfamily [Inorganic ion transport and metabolism Signal transduction mechanisms]. // NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 868  
Kegg Orthology  K05387
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004970 ionotropic glutamate receptor activity Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0018s10550g 1 848 + 848 Gaps:26 88.58 946 61.34 0.0 POPTRDRAFT_578647 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa026853mg 1 840 + 840 Gaps:47 92.45 888 62.73 0.0 hypothetical protein
blastp_kegg lcl|pmum:103323410 1 840 + 840 Gaps:47 89.92 913 62.12 0.0 glutamate receptor 2.8-like
blastp_kegg lcl|cic:CICLE_v10007402mg 1 838 + 838 Gaps:40 90.22 900 62.32 0.0 hypothetical protein
blastp_kegg lcl|cit:102618317 1 838 + 838 Gaps:40 87.69 926 62.32 0.0 glutamate receptor 2.8-like
blastp_kegg lcl|pop:POPTR_0089s00200g 1 862 + 862 Gaps:42 86.98 968 57.24 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPEppa1027121mg 1 815 + 815 Gaps:39 80.08 989 62.37 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0496s00200g 1 851 + 851 Gaps:46 92.81 904 57.45 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0637s00200g 1 820 + 820 Gaps:38 99.38 809 58.46 0.0 hypothetical protein
blastp_kegg lcl|fve:101314683 3 849 + 847 Gaps:39 91.29 907 56.88 0.0 glutamate receptor 2.8-like
blastp_pdb 3kg2_D 427 762 + 336 Gaps:37 43.86 823 21.88 4e-15 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_C 427 762 + 336 Gaps:37 43.86 823 21.88 4e-15 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_B 427 762 + 336 Gaps:37 43.86 823 21.88 4e-15 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_A 427 762 + 336 Gaps:37 43.86 823 21.88 4e-15 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3qlu_D 6 325 + 320 Gaps:30 78.48 395 24.84 1e-08 mol:protein length:395 Glutamate receptor ionotropic kainate 2
blastp_pdb 3qlu_C 6 325 + 320 Gaps:30 78.48 395 24.84 1e-08 mol:protein length:395 Glutamate receptor ionotropic kainate 2
blastp_pdb 3qlt_B 6 325 + 320 Gaps:30 78.48 395 24.84 1e-08 mol:protein length:395 Glutamate receptor ionotropic kainate 2
blastp_pdb 3qlt_A 6 325 + 320 Gaps:30 78.48 395 24.84 1e-08 mol:protein length:395 Glutamate receptor ionotropic kainate 2
blastp_pdb 2e4z_A 1 191 + 191 Gaps:19 38.72 501 26.80 3e-08 mol:protein length:501 Metabotropic glutamate receptor 7
blastp_pdb 3mq4_A 1 191 + 191 Gaps:11 40.33 481 25.77 5e-08 mol:protein length:481 Metabotropic glutamate receptor 7
blastp_uniprot_sprot sp|Q9C5V5|GLR28_ARATH 1 814 + 814 Gaps:57 83.95 947 47.04 0.0 Glutamate receptor 2.8 OS Arabidopsis thaliana GN GLR2.8 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGN0|GLR27_ARATH 1 825 + 825 Gaps:50 84.56 952 46.34 0.0 Glutamate receptor 2.7 OS Arabidopsis thaliana GN GLR2.7 PE 2 SV 3
blastp_uniprot_sprot sp|O81078|GLR29_ARATH 1 814 + 814 Gaps:48 84.04 940 47.34 0.0 Glutamate receptor 2.9 OS Arabidopsis thaliana GN GLR2.9 PE 2 SV 1
blastp_uniprot_sprot sp|O04660|GLR21_ARATH 1 764 + 764 Gaps:46 83.91 901 43.12 0.0 Glutamate receptor 2.1 OS Arabidopsis thaliana GN GLR2.1 PE 2 SV 2
blastp_uniprot_sprot sp|O81776|GLR24_ARATH 1 732 + 732 Gaps:42 79.46 896 44.94 0.0 Glutamate receptor 2.4 OS Arabidopsis thaliana GN GLR2.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFN5|GLR25_ARATH 1 758 + 758 Gaps:50 81.70 918 42.40 0.0 Glutamate receptor 2.5 OS Arabidopsis thaliana GN GLR2.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SHV1|GLR22_ARATH 1 740 + 740 Gaps:51 80.33 920 42.63 0.0 Glutamate receptor 2.2 OS Arabidopsis thaliana GN GLR2.2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LFN8|GLR26_ARATH 1 778 + 778 Gaps:55 80.56 967 41.34 0.0 Glutamate receptor 2.6 OS Arabidopsis thaliana GN GLR2.6 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SHV2|GLR23_ARATH 1 763 + 763 Gaps:55 84.47 895 41.93 0.0 Glutamate receptor 2.3 OS Arabidopsis thaliana GN GLR2.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q84W41|GLR36_ARATH 3 759 + 757 Gaps:59 82.61 903 39.54 3e-155 Glutamate receptor 3.6 OS Arabidopsis thaliana GN GLR3.6 PE 2 SV 1

27 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 741 761 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 478 478 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 762 867 106 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 382 717 336 PF00497 none Bacterial extracellular solute-binding proteins, family 3 none
Phobius 573 740 168 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 348 865 518 PTHR18966:SF6 none none none
PANTHER 3 324 322 PTHR18966:SF6 none none none
Phobius 553 572 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 359 454 96 G3DSA:3.40.190.10 none none none
Gene3D 674 717 44 G3DSA:3.40.190.10 none none none
SUPERFAMILY 3 319 317 SSF53822 none none IPR028082
Gene3D 4 56 53 G3DSA:3.40.50.2300 none none none
Gene3D 202 290 89 G3DSA:3.40.50.2300 none none none
Phobius 513 532 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 533 552 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 57 201 145 G3DSA:3.40.50.2300 none none none
Gene3D 468 620 153 G3DSA:1.10.287.70 none none none
Pfam 480 751 272 PF00060 none Ligand-gated ion channel IPR001320
Phobius 479 501 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 502 512 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 359 718 360 SM00079 none Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IPR001320
PANTHER 348 865 518 PTHR18966 none none none
PANTHER 3 324 322 PTHR18966 none none none
SUPERFAMILY 601 718 118 SSF53850 none none none
SUPERFAMILY 354 485 132 SSF53850 none none none
PIRSF 1 860 860 PIRSF037090 none none IPR017103
Pfam 2 306 305 PF01094 none Receptor family ligand binding region IPR001828

4 Localization

Analysis Start End Length
TMHMM 557 579 22
TMHMM 479 501 22
TMHMM 743 765 22
TMHMM 514 536 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting