Protein : Qrob_P0173680.2 Q. robur
Protein Identifier  ? Qrob_P0173680.2 Organism . Name  Quercus robur
Score  27.4 Score Type  egn
Protein Description  (M=1) KOG0947//KOG0953 - Cytoplasmic exosomal RNA helicase SKI2 DEAD-box superfamily [RNA processing and modification]. // Mitochondrial RNA helicase SUV3 DEAD-box superfamily [RNA processing and modification]. Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 606  
Kegg Orthology  K17675
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0016817 hydrolase activity, acting on acid anhydrides Catalysis of the hydrolysis of any acid anhydride.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100853943 74 605 + 532 Gaps:94 75.68 806 69.02 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial-like
blastp_kegg lcl|tcc:TCM_018504 45 605 + 561 Gaps:94 75.12 852 66.25 0.0 ATP-dependent RNA helicase SUPV3L1 isoform 1
blastp_kegg lcl|cic:CICLE_v10011090mg 83 604 + 522 Gaps:84 72.48 814 68.14 0.0 hypothetical protein
blastp_kegg lcl|cit:102629021 83 604 + 522 Gaps:89 72.31 809 68.55 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial-like
blastp_kegg lcl|fve:101294582 31 605 + 575 Gaps:167 89.11 808 54.44 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial-like
blastp_kegg lcl|pop:POPTR_0017s11820g 15 605 + 591 Gaps:184 94.38 783 53.59 0.0 POPTRDRAFT_736302 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa001533mg 13 605 + 593 Gaps:103 82.63 806 64.41 0.0 hypothetical protein
blastp_kegg lcl|pmum:103329996 13 605 + 593 Gaps:105 80.92 823 64.41 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial
blastp_kegg lcl|rcu:RCOM_0703820 142 605 + 464 Gaps:53 62.07 820 72.50 0.0 ATP-dependent RNA and DNA helicase putative
blastp_kegg lcl|fve:101296048 34 605 + 572 Gaps:161 89.01 801 53.58 0.0 ATP-dependent RNA helicase SUPV3L1 mitochondrial-like
blastp_pdb 3rc8_A 224 549 + 326 Gaps:60 56.43 677 38.22 9e-70 mol:protein length:677 ATP-dependent RNA helicase SUPV3L1 mitochond
blastp_pdb 3rc3_A 224 549 + 326 Gaps:60 56.43 677 38.22 9e-70 mol:protein length:677 ATP-dependent RNA helicase SUPV3L1 mitochond
blastp_pdb 4a4z_A 300 378 + 79 Gaps:2 7.72 997 37.66 1e-06 mol:protein length:997 ANTIVIRAL HELICASE SKI2
blastp_uniprot_sprot sp|Q8IYB8|SUV3_HUMAN 224 549 + 326 Gaps:60 48.60 786 38.22 2e-68 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Homo sapiens GN SUPV3L1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5EBA1|SUV3_RAT 224 543 + 320 Gaps:59 48.58 776 37.40 1e-66 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Rattus norvegicus GN Supv3l1 PE 2 SV 1
blastp_uniprot_sprot sp|Q80YD1|SUV3_MOUSE 224 543 + 320 Gaps:59 48.40 779 36.87 1e-65 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Mus musculus GN Supv3l1 PE 2 SV 1
blastp_uniprot_sprot sp|A4IG62|SUV3_DANRE 224 549 + 326 Gaps:60 50.07 763 37.70 3e-65 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Danio rerio GN supv3l1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5ZJT0|SUV3_CHICK 224 549 + 326 Gaps:60 48.11 794 36.91 1e-62 ATP-dependent RNA helicase SUPV3L1 mitochondrial OS Gallus gallus GN SUPV3L1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9VN03|SUV3_DROME 224 583 + 360 Gaps:64 55.05 763 34.52 4e-57 ATP-dependent RNA helicase SUV3 homolog mitochondrial OS Drosophila melanogaster GN CG9791 PE 2 SV 3
blastp_uniprot_sprot sp|Q17828|SUV3_CAEEL 224 543 + 320 Gaps:58 51.04 721 35.60 2e-55 ATP-dependent RNA helicase SUV3 homolog mitochondrial OS Caenorhabditis elegans GN C08F8.2 PE 3 SV 2
blastp_uniprot_sprot sp|Q61SU7|SUV3_CAEBR 224 543 + 320 Gaps:58 51.04 721 36.41 2e-55 ATP-dependent RNA helicase SUV3 homolog mitochondrial OS Caenorhabditis briggsae GN CBG06022 PE 3 SV 3
blastp_uniprot_sprot sp|Q295E6|SUV3_DROPS 224 583 + 360 Gaps:69 54.46 762 33.73 2e-54 ATP-dependent RNA helicase SUV3 homolog mitochondrial OS Drosophila pseudoobscura pseudoobscura GN GA22038 PE 3 SV 1
blastp_uniprot_sprot sp|O94445|SUV3_SCHPO 222 543 + 322 Gaps:73 59.20 647 31.33 2e-49 ATP-dependent RNA helicase suv3 mitochondrial OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN suv3 PE 3 SV 1
rpsblast_cdd gnl|CDD|197757 297 378 + 82 Gaps:12 87.80 82 34.72 7e-12 smart00490 HELICc helicase superfamily c-terminal domain.
rpsblast_cdd gnl|CDD|201125 297 378 + 82 Gaps:12 92.31 78 33.33 2e-10 pfam00271 Helicase_C Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit but an integral part of the helicase.
rpsblast_cdd gnl|CDD|28960 294 380 + 87 Gaps:12 58.78 131 32.47 3e-09 cd00079 HELICc Helicase superfamily c-terminal domain associated with DEXDc- DEAD- and DEAH-box proteins yeast initiation factor 4A Ski2p and Hepatitis C virus NS3 helicases this domain is found in a wide variety of helicases and helicase related proteins may not be an autonomously folding unit but an integral part of the helicase 4 helicase superfamilies at present according to the organization of their signature motifs all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA unwinding the duplex in the process.
rpsblast_cdd gnl|CDD|34219 322 378 + 57 none 5.48 1041 38.60 2e-08 COG4581 COG4581 Superfamily II RNA helicase [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|204947 523 571 + 49 Gaps:1 97.96 49 33.33 7e-08 pfam12513 SUV3_C Mitochondrial degradasome RNA helicase subunit C terminal. This domain family is found in bacteria and eukaryotes and is approximately 50 amino acids in length. The family is found in association with pfam00271. The yeast mitochondrial degradosome (mtEXO) is an NTP-dependent exoribonuclease involved in mitochondrial RNA metabolism. mtEXO is made up of two subunits: an RNase (DSS1) and an RNA helicase (SUV3). These co-purify with mitochondrial ribosomes.
rpsblast_kog gnl|CDD|36171 218 602 + 385 Gaps:61 63.14 700 42.53 1e-127 KOG0953 KOG0953 KOG0953 Mitochondrial RNA helicase SUV3 DEAD-box superfamily [RNA processing and modification].
rpsblast_kog gnl|CDD|36165 328 378 + 51 none 4.09 1248 45.10 9e-07 KOG0947 KOG0947 KOG0947 Cytoplasmic exosomal RNA helicase SKI2 DEAD-box superfamily [RNA processing and modification].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 286 384 99 G3DSA:3.40.50.300 none none IPR027417
PANTHER 218 605 388 PTHR12131 none none none
Pfam 295 378 84 PF00271 none Helicase conserved C-terminal domain IPR001650
SMART 286 378 93 SM00490 none helicase superfamily c-terminal domain IPR001650
ProSiteProfiles 259 416 158 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
SUPERFAMILY 288 506 219 SSF52540 none none IPR027417
PANTHER 218 605 388 PTHR12131:SF1 none none none
Pfam 523 571 49 PF12513 none Mitochondrial degradasome RNA helicase subunit C terminal IPR022192

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 22   Secretory pathway 4 0.589 0.233 NON-PLANT 22